YRC Public Data Repository - Protein Structure Prediction

Protein:	FGF15_MOUSE
Organism:	Mus musculus
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FGF15_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|18389437, gi\|... - gi\|18543367\|ref\|NP_570109.1\| fibroblast growth factor 15 [Rattus norvegicus], gi\|18389437\|dbj\|BAB842...	237.0	[0..1]	[218..1]
gi\|30584767, gi\|... - gi\|61370407\|gb\|AAX43490.1\| fibroblast growth factor 19 [synthetic construct], gi\|30584767\|gb\|AAP3663...	201.0	[0..5]	[218..2]
FGF19 - fibroblast growth factor 19 gi\|61360673, gi\|... - gi\|61360678\|gb\|AAX41903.1\| fibroblast growth factor 19 [synthetic construct], gi\|61360673\|gb\|AAX4190...	201.0	[0..5]	[218..2]
gi\|109105126 - gi\|109105126\|ref\|XP_001100825.1\| PREDICTED: fibroblast growth factor 19 [Macaca mulatta]	198.0	[0..5]	[218..2]
gi\|12024873 - gi\|12024873\|gb\|AAG45674.1\|AF190448_1 fibroblast growth factor 8 [Ambystoma mexicanum]	192.0	[0..5]	[204..3]
gi\|6911121 - gi\|6911121\|gb\|AAF31392.1\|AF199605_1 fibroblast growth factor homologous factor 4 isoform 1A [Gallus ...	191.0	[0..2]	[209..7]
gi\|51949976, gi\|... - gi\|56118518\|ref\|NP_001008163.1\| fibroblast growth factor 8 (androgen-induced) [Xenopus (Silurana) tr...	191.0	[0..9]	[206..6]
gi\|213624952, gi... - gi\|27462802\|gb\|AAO15593.1\|AF461177_1 fibroblast growth factor-8b [Xenopus laevis], gi\|213626476\|gb\|A...	191.0	[0..9]	[206..6]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARKWNGRAV ARALVLATLW LAVSGRPLAQ QSQSVSDEDP LFLYGWGKIT RLQYLYSAGP  60
   61 YVSNCFLRIR SDGSVDCEED QNERNLLEFR AVALKTIAIK DVSSVRYLCM SADGKIYGLI 120
  121 RYSEEDCTFR EEMDCLGYNQ YRSMKHHLHI IFIQAKPREQ LQDQKPSNFI PVFHRSFFET 180
  181 GDQLRSKMFS LPLESDSMDP FRMVEDVDHL VKSPSFQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.09691
Match:	2p23A
Description:	No description for 2p23A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits