YRC Public Data Repository - Protein Structure Prediction

Protein:	TBCD7_MOUSE
Organism:	Mus musculus
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBCD7_MOUSE.

Description	E-value	Query Range	Subject Range
TBC1D7 - TBC1 domain family, member 7	239.0	[0..1]	[293..1]
gi\|114605521, gi... - gi\|55625872\|ref\|XP_518243.1\| PREDICTED: TBC1 domain family, member 7 isoform 13 [Pan troglodytes], g...	239.0	[0..1]	[293..1]
gi\|57110228 - gi\|57110228\|ref\|XP_535890.1\| PREDICTED: similar to TBC1 domain family, member 7 isoform 1 [Canis fam...	238.0	[0..1]	[293..1]
TBCD7_BOVIN - TBC1 domain family member 7 OS=Bos taurus GN=TBC1D7 PE=2 SV=1	236.0	[0..1]	[293..1]
gi\|62663400 - gi\|62663400\|ref\|XP_341511.2\| PREDICTED: similar to TBC1 domain family, member 7 [Rattus norvegicus]	236.0	[0..1]	[293..1]
gi\|3511223, gi\|9... - gi\|9755639\|emb\|CAC01792.1\| plant adhesion molecule 1 (PAM1) [Arabidopsis thaliana], gi\|3511223\|gb\|AA...	233.0	[0..11]	[282..43]
gi\|68357830 - gi\|68357830\|ref\|XP_684364.1\| PREDICTED: similar to TBC1 domain family, member 10B [Danio rerio]	231.0	[0..11]	[281..283]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDRLDIE KLCTFSQRFP LPSMYRALVW  60
   61 KALLGILPPH HDTHSQVMAY RKDQYHDILH ALTVVRFISD ATPQAEVYLR MYQLESGKLP 120
  121 RSPSFPLEPE DEVFLAIAKA MEEMVEDSVD CYWISRCFVK QLNNKYRDAL PQLPKAFEQY 180
  181 LNLEDSRLLS HLKTCSAVSK LPYDLWFQRC FAGCLPESSL QRVWDKVVSG SCKILVFVAV 240
  241 EILLTFKIKV MALNSAEKIT KFLENIPQDS SDAIVSKAID LWHKHCGTPV HSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2qfzA
Description:	No description for 2qfzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits