YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB9_MOUSE
Organism:	Mus musculus
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB9_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|187469746, gi... - gi\|197245756\|gb\|AAI68767.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 [Rattus norvegicus]...	299.0	[0..1]	[179..1]
NDUB9_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2	294.0	[0..1]	[178..1]
gi\|57095338 - gi\|57095338\|ref\|XP_532326.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	291.0	[0..1]	[178..1]
NDUB9_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3 NDUB9_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 - Pongo pygmaeus (Orangutan)	291.0	[0..1]	[178..1]
NDUFB9 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa gi\|208966832 - gi\|208966832\|dbj\|BAG73430.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex 9 [synthetic construc...	290.0	[0..1]	[178..1]
NDUB9_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3	289.0	[0..1]	[178..1]
NDUB9_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=... gi\|111662023 - gi\|111662023\|gb\|ABH12194.1\| mitochondrial complex I subunit NDUFB9 [Gorilla gorilla]	289.0	[0..1]	[178..1]
gi\|62955727, gi\|... - gi\|68382570\|ref\|XP_689133.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|62955727\|ref\|NP_00101...	261.0	[0..7]	[178..3]
gi\|50731984 - gi\|50731984\|ref\|XP_418444.1\| PREDICTED: similar to NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) cha...	260.0	[0..7]	[178..2]

Back

Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFCAPPAYL THQQKVLRLY KRALRHLESW CIHRDKYRYF ACLMRARFEE HKNEKDMMRA  60
   61 TQLLREAEEE FWQNQHPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.065502
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYIFPDSPGG TSFERYECYK VPEWCLDYWH PSEKAMYPDY FSKREQWKKL RMESWDREVK  60
   61 QLQEETSPDG IMTEALPPAR REGDLPPLWW HIVTRPRERP T

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits