YRC Public Data Repository - Protein Structure Prediction

Protein:	PIHD1_MOUSE
Organism:	Mus musculus
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIHD1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|45946427 - gi\|45946427\|gb\|AAH68254.1\| Pih1d1 protein [Mus musculus]	406.0	[0..1]	[290..1]
PIHD1_RAT - PIH1 domain-containing protein 1 OS=Rattus norvegicus GN=Pih1d1 PE=1 SV=1	389.0	[0..1]	[290..1]
gi\|73947984 - gi\|73947984\|ref\|XP_854758.1\| PREDICTED: similar to F32D8.4 [Canis familiaris]	380.0	[0..1]	[290..1]
gi\|12654549 - gi\|12654549\|gb\|AAH01108.1\| PIH1 domain containing 1 [Homo sapiens] gi\|190690623 - gi\|190690623\|gb\|ACE87086.1\| PIH1 domain containing 1 protein [synthetic construct]	374.0	[0..1]	[290..1]
gi\|109125503, gi... - gi\|109125503\|ref\|XP_001115052.1\| PREDICTED: similar to CG5792-PA, isoform A isoform 2 [Macaca mulatt...	371.0	[0..1]	[290..1]
PIHD1_BOVIN - PIH1 domain-containing protein 1 OS=Bos taurus GN=PIH1D1 PE=2 SV=1	370.0	[0..1]	[290..1]
gi\|114678366 - gi\|114678366\|ref\|XP_512819.2\| PREDICTED: similar to NOP17 [Pan troglodytes]	344.0	[0..29]	[290..1]
PIHD1_XENLA - PIH1 domain-containing protein 1 OS=Xenopus laevis GN=pih1d1 PE=2 SV=1	330.0	[0..2]	[287..3]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSTFLAPE LSDTESMGEE TVRFQELLLK ASKELQQAQT ARPDSTQIQP KPGFCVKTNS  60
   61 SEGKVFINIC HSPSIPPPAD VTEDELLQML EEDQAGFRIP MSLGEPHAEL DAKGQGCTAY 120
  121 DVAVNSNFYL RMQNSDFLRE LVVTIAREGL EDKYGLQLNP EWRMLKYRSF LGSISQQNIR 180
  181 SQQRPRIQEL GTLDASGSLG TCHGPERPHL N

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.0
Match:	PF08190.3
Description:	No description for PF08190.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LWLEAPDLLL AEVDLPKLDG AQGLALEIGE NRLVIGGPQQ LYHLDATVPL RINSEASRAA  60
   61 FHRRRKQLMV SMPLLTASS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.67
Match:	1shsA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits