YRC Public Data Repository - Protein Structure Prediction

Protein:	HIG2A_MOUSE
Organism:	Mus musculus
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HIG2A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|183986567, gi... - ref\|XP_214433.1\| similar to RIKEN cDNA 2010110M21 [Rattus norvegicus], gi\|183986567\|gb\|AAI66544.1\| H...	155.0	[0..1]	[106..1]
HIGD2A - HIG1 hypoxia inducible domain family, member 2A gi\|123981980, gi... - gi\|123996809\|gb\|ABM86006.1\| HIG1 domain family, member 2A [synthetic construct], gi\|123981980\|gb\|ABM...	153.0	[0..1]	[105..1]
gi\|114603533 - gi\|114603533\|ref\|XP_527130.2\| PREDICTED: hypothetical protein [Pan troglodytes]	151.0	[0..1]	[105..1]
gi\|61862118, gi\|... - gi\|61862118\|ref\|XP_582867.1\| PREDICTED: similar to CG9921-PA [Bos taurus], gi\|119895156\|ref\|XP_00125...	149.0	[0..1]	[105..1]
gi\|109079837 - gi\|109079837\|ref\|XP_001084675.1\| PREDICTED: similar to HIG1 domain family, member 2A [Macaca mulatta...	149.0	[0..1]	[105..1]
gi\|57085177 - gi\|57085177\|ref\|XP_536423.1\| PREDICTED: similar to CG9921-PA isoform 1 [Canis familiaris]	148.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGPVSPE APFDPSKPPV IEGFSPTVYS NPEGFKEKFI RKTRENPMVP IGCLGTAAAL  60
   61 TYGLYCFHRG QSHRSQLMMR TRIAAQGFTV VAILLGLAAS AMKSQA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.958607
Match:	PF04588.4
Description:	No description for PF04588.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits