YRC Public Data Repository - Protein Structure Prediction

Protein:	RPP14_MOUSE
Organism:	Mus musculus
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPP14_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109502165, gi... - gi\|62661158\|ref\|XP_341296.2\| PREDICTED: similar to ribonuclease P 14kDa subunit [Rattus norvegicus],...	211.0	[0..1]	[122..1]
RPP14 - ribonuclease P/MRP 14kDa subunit RPP14_PONPY - Ribonuclease P protein subunit p14 - Pongo pygmaeus (Orangutan) RPP14_PONAB - Ribonuclease P protein subunit p14 OS=Pongo abelii GN=RPP14 PE=2 SV=3 gi\|114587574 - gi\|114587574\|ref\|XP_001174072.1\| PREDICTED: ribonuclease P 14kDa subunit [Pan troglodytes]	205.0	[0..2]	[122..4]
gi\|60811918 - gi\|60811918\|gb\|AAX36190.1\| ribonuclease P 14kDa subunit [synthetic construct]	204.0	[0..2]	[122..4]
gi\|73985286 - gi\|73985286\|ref\|XP_849188.1\| PREDICTED: similar to ribonuclease P 14kDa subunit [Canis familiaris]	201.0	[0..2]	[122..4]
gi\|61874790, gi\|... - gi\|76648780\|ref\|XP_869659.1\| PREDICTED: similar to ribonuclease P 14kDa subunit isoform 2 [Bos tauru...	197.0	[0..2]	[122..4]
gi\|109038068 - gi\|109038068\|ref\|XP_001095163.1\| PREDICTED: similar to ribonuclease P 14kDa subunit [Macaca mulatta]	168.0	[0..25]	[122..117]
gi\|115530771 - gi\|115530771\|emb\|CAL49377.1\| ribonuclease P 14kDa subunit [Xenopus tropicalis]	159.0	[0..4]	[122..18]
gi\|27820041 - gi\|27820041\|gb\|AAO25052.1\| GM02245p [Drosophila melanogaster]	151.0	[0..12]	[106..49]
gi\|94732553, gi\|... - gi\|94732553\|emb\|CAK05043.1\| novel protein similar to vertebrate ribonuclease P 14kDa subunit (RPP14)...	142.0	[0..3]	[119..4]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPATAYERVV YKSPSEYHYM KVCLEFQEHG VGLNVAQFKQ LLVSALRDLF GEVGAALPVD  60
   61 VLTYDEKTLS AILRICSSGL VKLWSSLTLF GAYKSKKCAF RVIQVSPFLL ALSGNSREQV 120
  121 LD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.89
Match:	2av5A
Description:	Crystal structure of Pyrococcus furiosus Pop5, an archaeal Ribonuclease P protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits