YRC Public Data Repository - Protein Structure Prediction

Protein:	CN166_MOUSE
Organism:	Mus musculus
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CN166_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73963786 - gi\|73963786\|ref\|XP_853466.1\| PREDICTED: similar to Protein C14orf166 [Canis familiaris]	425.0	[0..1]	[244..95]
gi\|109083601 - gi\|109083601\|ref\|XP_001098671.1\| PREDICTED: similar to Protein C14orf166 [Macaca mulatta]	424.0	[0..1]	[244..168]
gi\|114653040 - gi\|114653040\|ref\|XP_509946.2\| PREDICTED: similar to CGI-99 protein [Pan troglodytes]	421.0	[0..1]	[244..109]
ENSMMUT000000255... - null, null CN166_PONAB - UPF0568 protein C14orf166 homolog OS=Pongo abelii PE=2 SV=1 C14orf166 - chromosome 14 open reading frame 166 gi\|208966010, gi... - gi\|208966010\|dbj\|BAG73019.1\| chromosome 14 open reading frame 166 [synthetic construct], gi\|16777380... ENSPTRT00000011615 - null CN166_PONPY - Protein C14orf166 homolog - Pongo pygmaeus (Orangutan)	411.0	[0..1]	[244..1]
gi\|78369460, gi\|... - gi\|78369460\|ref\|NP_001030357.1\| homeobox prox 1 [Bos taurus], gi\|74354567\|gb\|AAI02277.1\| Chromosome ...	404.0	[0..1]	[244..1]
CN166_DANRE - UPF0568 protein C14orf166 homolog OS=Danio rerio GN=zgc:56576 PE=2 SV=1	392.0	[0..1]	[244..1]
gi\|45382455, gi\|... - gi\|45382455\|ref\|NP_990700.1\| chromosome 14 open reading frame 166 [Gallus gallus], gi\|1184955\|gb\|AAA...	391.0	[0..1]	[244..1]
gi\|45478224, gi\|... - gi\|45478224\|gb\|AAS66283.1\| LRRGT00192 [Rattus norvegicus], gi\|114145722\|ref\|NP_001041339.1\| hypothet...	386.0	[0..1]	[244..1]

Back

Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRRKLTALD YHNPSGFNCK DETEFRNFIV WLEDQKIRHY KIEDRGNLRN IHSSDWPKFF  60
   61 EKYLKDVNCP FKIQDRQEAI DWLLGLAVRL EYGDNAEKYK DLVPDNRKNT DNAAKNAEPL 120
  121 INLDVNNPDF KAGVMALANL LQIQRHDDYL VMLKAIRILV QERLTQDAVA KANQTKEGLP 180
  181 VALEKHILGF DTGDAVLNEA AQILRLLHIE ELRELQTKIN EAIVAVQAII ADPKTDHRLG 240
  241 KVGR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits