YRC Public Data Repository - Protein Structure Prediction

Protein:	ISK1_MOUSE
Organism:	Mus musculus
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISK1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109074936 - gi\|109074936\|ref\|XP_001097743.1\| PREDICTED: SPARC-like 1 isoform 3 [Macaca mulatta]	85.0	[0..1]	[80..389]
gi\|67971058 - gi\|67971058\|dbj\|BAE01871.1\| unnamed protein product [Macaca fascicularis]	85.0	[0..1]	[80..422]
gi\|59860161 - gi\|59860161\|gb\|AAX09643.1\| mini-agrin [Mus musculus]	84.0	[0..14]	[80..178]
gi\|114595037, gi... - gi\|114595045\|ref\|XP_001159036.1\| PREDICTED: SPARC-like 1 isoform 9 [Pan troglodytes], gi\|114595043\|r...	84.0	[0..1]	[80..425]
gi\|197101799 - gi\|197101799\|ref\|NP_001126668.1\| SPARC-like 1 [Pongo abelii] gi\|55732300 - gi\|55732300\|emb\|CAH92853.1\| hypothetical protein [Pongo abelii]	84.0	[0..1]	[80..425]
gi\|21359871, gi\|... - gi\|809027\|emb\|CAA60386.1\| Hevin-like protein [Homo sapiens], gi\|21359871\|ref\|NP_004675.2\| SPARC-like...	84.0	[0..1]	[80..425]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVAVIFLLS ALALLSLAGN TFSAKVTGKE ASCHDAVAGC PRIYDPVCGT DGITYANECV  60
   61 LCFENRKRIE PVLIRKGGPC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1yu6C
Description:	Crystal Structure of the Subtilisin Carlsberg:OMTKY3 Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits