YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12860000, gi\|...
Organism:	Mus musculus
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12860000, gi|....

Description	E-value	Query Range	Subject Range
gi\|109132071 - gi\|109132071\|ref\|XP_001083304.1\| PREDICTED: similar to UPF3 regulator of nonsense transcripts homolo...	99.0	[0..2]	[51..439]
gi\|50915614, gi\|... - gi\|50915614\|ref\|XP_468271.1\| putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-gro...	83.0	[0..1]	[50..68]
gi\|62087734 - gi\|62087734\|dbj\|BAD92314.1\| ribosomal protein L39 variant [Homo sapiens]	83.0	[0..1]	[51..20]
gi\|68351805 - gi\|68351805\|gb\|EAN32566.1\| 60S ribosomal protein L39, putative [Theileria parva] gi\|71030414 - gi\|71030414\|ref\|XP_764849.1\| 60S ribosomal protein L39 [Theileria parva strain Muguga]	72.0	[0..1]	[51..29]
gi\|88183639, gi\|... - gi\|88183639\|gb\|EAQ91107.1\| hypothetical protein CHGG_03042 [Chaetomium globosum CBS 148.51], gi\|1162...	72.0	[0..1]	[51..1]
RL391_ARATH - 60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2	72.0	[0..1]	[50..1]
gi\|57471714 - gi\|57471714\|gb\|AAW50988.1\| ribosomal protein L39 [Triticum aestivum]	70.0	[0..1]	[50..1]
gi\|134088329, gi... - gi\|50258687\|gb\|EAL21372.1\| hypothetical protein CNBD0680 [Cryptococcus neoformans var. neoformans B-... gi\|25956305 - gb\|AAN75719.1\| RPL39 [Cryptococcus neoformans var. neoformans]	69.0	[0..2]	[51..9]

Back

Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASHKTFRIK RFLAKKQKQN RPIPQWIQMK TGNKIMYNSK RRHWRRTKLG L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits