YRC Public Data Repository - Protein Structure Prediction

Protein:	BORG2_MOUSE
Organism:	Mus musculus
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BORG2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|162287304, gi... - gi\|34862050\|ref\|XP_233815.2\| PREDICTED: similar to CDC42 effector protein (Rho GTPase binding) 3 [Ra...	323.0	[0..1]	[254..1]
gi\|60653989, gi\|... - gi\|60653989\|gb\|AAX29687.1\| CDC42 effector protein 3 [synthetic construct], gi\|30585393\|gb\|AAP36969.1...	322.0	[0..1]	[254..1]
gi\|114576984, gi... - gi\|55595515\|ref\|XP_515415.1\| PREDICTED: Cdc42 effector protein 3 isoform 3 [Pan troglodytes], gi\|114... gi\|61362506, gi\|... - gi\|61362509\|gb\|AAX42235.1\| CDC42 effector protein 3 [synthetic construct], gi\|61362506\|gb\|AAX42234.1... CDC42EP3 - CDC42 effector protein (Rho GTPase binding) 3	321.0	[0..1]	[254..1]
gi\|61822521, gi\|... - gi\|86826370\|gb\|AAI12774.1\| CDC42 effector protein (Rho GTPase binding) 3 [Bos taurus], gi\|76677986\|r...	313.0	[0..1]	[254..1]
gi\|57098245 - gi\|57098245\|ref\|XP_532935.1\| PREDICTED: similar to Cdc42 effector protein 3 [Canis familiaris]	304.0	[0..1]	[254..1]
gi\|113931486, gi... - gi\|89267414\|emb\|CAJ83192.1\| CDC42 effector protein (Rho GTPase binding) 3 [Xenopus tropicalis], gi\|1...	278.0	[0..1]	[254..1]
gi\|50740824 - gi\|50740824\|ref\|XP_426134.1\| PREDICTED: similar to MSE55-related protein [Gallus gallus]	271.0	[0..1]	[254..1]
gi\|148225632, gi... - gi\|54673689\|gb\|AAH84973.1\| LOC495498 protein [Xenopus laevis], gi\|148225632\|ref\|NP_001088607.1\| hypo...	257.0	[0..1]	[254..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAKTPIYLK AANNKKGKKF KLRDILSPDM ISPPLGDFRH TIHIGKEGQH DVFGDISFLQ  60
   61 GNYELLPGNQ EKAHSGQFPG HNDFFRANST SDSMFTETPS PVLKNAISLP TIGGSQALML 120
  121 PLLSPVTFHS KQESFGRPK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	8.958607
Match:	PF00786.12
Description:	No description for PF00786.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPRLSCEPVM EEKVQEQSSL LENGAVHQGD TSWGSSGSGS QSSQGRDSHS SSLSEQSSDW  60
   61 PADDMFEHPA SCELVKSKTK SEESFSDLTG SLLSLQLDLG PSLLDEVLNV MDKNK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.319	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.298	d.20.1	UBC-like
View	Download	0.278	a.79.1	Antitermination factor NusB
View	Download	0.258	a.79.1	Antitermination factor NusB
View	Download	0.253	a.165.1	Myosin phosphatase inhibitor 17kDa protein, CPI-17
View	Download	0.230	d.54.1	Enolase N-terminal domain-like
View	Download	0.209	a.1.1	Globin-like
View	Download	0.207	a.5.6	Hypothetical protein MTH1615

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits