YRC Public Data Repository - Protein Structure Prediction

Protein:	PBDC1_MOUSE
Organism:	Mus musculus
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBDC1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|62667094, gi\|... - gi\|62667094\|ref\|XP_343809.2\| PREDICTED: similar to CG7519-PA [Rattus norvegicus], gi\|157818635\|ref\|N...	318.0	[0..1]	[198..1]
gi\|74179171 - gi\|74179171\|dbj\|BAB25165.3\| unnamed protein product [Mus musculus]	304.0	[0..1]	[185..1]
CXorf26 - chromosome X open reading frame 26	300.0	[0..1]	[195..1]
gi\|109131289 - gi\|109131289\|ref\|XP_001098545.1\| PREDICTED: similar to CG7519-PA [Macaca mulatta]	292.0	[0..1]	[195..1]
gi\|61812935 - gi\|61812935\|ref\|XP_588255.1\| PREDICTED: chromosome X open reading frame 26 ortholog isoform 1 [Bos t...	282.0	[0..1]	[196..1]
gi\|74007756 - gi\|74007756\|ref\|XP_549089.2\| PREDICTED: similar to CG7519-PA isoform 1 [Canis familiaris]	280.0	[0..1]	[197..1]
gi\|114689223 - gi\|114689223\|ref\|XP_529047.2\| PREDICTED: similar to Chromosome X open reading frame 26, partial [Pan...	236.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAAGESEEP VSGEALSIAH ALSHPPESYG NDPDIEMAWA IRAMQHAEVY YKLISSVDPQ  60
   61 FLKLTKVDDQ IYSEFREIFE TLRVDVLDPE ELKSESAKEK WRPFCLKFEG IVEDYNYGTL 120
  121 LRLDCSQGYT EENTIFAPRI QFFAIEIARN REGYNKAVSV SIQDKEGEEG AGNKEEAAEK 180
  181 GADSGGEKEE GANREGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	108.657577
Match:	PF05516.2
Description:	No description for PF05516.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits