YRC Public Data Repository - Protein Structure Prediction

Protein:	CISD2_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CISD2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109467679, gi... - gi\|109467679\|ref\|XP_001077768.1\| PREDICTED: similar to CG1458-PA [Rattus norvegicus], gi\|109465611\|r...	242.0	[0..1]	[135..114]
gi\|74002297 - gi\|74002297\|ref\|XP_852575.1\| PREDICTED: similar to CG1458-PA [Canis familiaris]	241.0	[0..1]	[135..110]
gi\|31874034 - gi\|31874034\|emb\|CAD97935.1\| hypothetical protein [Homo sapiens]	240.0	[0..1]	[135..16]
gi\|12835374 - gi\|12835374\|dbj\|BAB23237.1\| unnamed protein product [Mus musculus]	236.0	[0..1]	[135..1]
CISD2_XENTR - CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1	234.0	[0..1]	[135..1]
CID2A_XENLA - CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis GN=cisd2-a PE=2 SV=1	232.0	[0..1]	[135..1]
gi\|50746903 - gi\|50746903\|ref\|XP_420668.1\| PREDICTED: similar to Zinc finger, CDGSH-type domain 2 [Gallus gallus]	229.0	[0..1]	[135..1]
CG1458-PA - This gene is referred to in FlyBase by the symbol Dmel\CG1458 (CG1458, FBgn0062442). It is a protein... gi\|220957632, gi... - gi\|220957632\|gb\|ACL91359.1\| CG1458-PA [synthetic construct], gi\|220948878\|gb\|ACL86982.1\| CG1458-PA [...	211.0	[0..3]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLDSVARIV KVQLPAYLKQ LPVPDSITGF ARLTVSDWLR LLPFLGVLAL LGYLAVRPFF  60
   61 PKKKQQKDSL INLKIQKENP KVVNEINIED LCLTKAAYCR CWRSKTFPAC DGSHNKHNEL 120
  121 TGDNVGPLIL KKKEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	2qd0A
Description:	No description for 2qd0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits