YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13385726, gi\|...
Organism:	Mus musculus
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13385726, gi|....

Description	E-value	Query Range	Subject Range
gi\|187469727, gi... - gi\|34866011\|ref\|XP_343226.1\| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...	175.0	[0..1]	[111..1]
gi\|21595014 - gi\|21595014\|gb\|AAH31607.1\| Ubiquinol-cytochrome c reductase binding protein [Mus musculus]	175.0	[0..1]	[111..1]
gi\|73999619 - gi\|73999619\|ref\|XP_535132.2\| PREDICTED: similar to ubiquinol-cytochrome c reductase binding protein ...	172.0	[0..5]	[111..38]
gi\|5822462, gi\|3... - gi\|5822462\|pdb\|2BCC\|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken, gi\|3660381\|pd...	172.0	[0..2]	[110..1]
QCR7_BOVIN - Cytochrome b-c1 complex subunit 7 OS=Bos taurus GN=UQCRB PE=1 SV=3	172.0	[0..1]	[111..1]
UCR6_PONPY - Ubiquinol-cytochrome c reductase complex 14 kDa protein - Pongo pygmaeus (Orangutan) QCR7_PONAB - Cytochrome b-c1 complex subunit 7 OS=Pongo abelii GN=UQCRB PE=3 SV=3	171.0	[0..1]	[111..1]
gi\|30583843, gi\|... - gi\|60653555\|gb\|AAX29471.1\| ubiquinol-cytochrome c reductase binding protein [synthetic construct], g...	171.0	[0..1]	[111..1]
UQCRB - ubiquinol-cytochrome c reductase binding protein gi\|55630988 - gi\|55630988\|ref\|XP_519866.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	170.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRSAVSAS SKWLDGFRKW YYNAAGFNKL GLMRDDTLHE TEDVKEAIRR LPEDLYNDRM  60
   61 FRIKRALDLT MRHQILPKDQ WTKYEEDKFY LEPYLKEVIR ERKEREEWAK K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1bccF
Description:	14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	8.7065797741764	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	8.7065797741764	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.17739656377432	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.63908133042525	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.48702641896397	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.88973324048899	bayes_pls_golite062009
oxidoreductase activity	4.83598965448391	bayes_pls_golite062009
cation transmembrane transporter activity	4.64530477348772	bayes_pls_golite062009
ion transmembrane transporter activity	4.44988249046834	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	4.04580005556932	bayes_pls_golite062009
substrate-specific transporter activity	3.85284374888084	bayes_pls_golite062009
binding	1.33677693666883	bayes_pls_golite062009
protein binding	0.634460610267232	bayes_pls_golite062009
catalytic activity	0.385153095337306	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: