YRC Public Data Repository - Protein Structure Prediction

Protein:	MIEN1_MOUSE
Organism:	Mus musculus
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIEN1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|34873611 - gi\|34873611\|ref\|XP_340893.1\| PREDICTED: similar to chromosome 17 open reading frame 37 [Rattus norve...	157.0	[0..1]	[115..1]
gi\|13473369, gi\|... - gi\|14024118\|dbj\|BAB50722.1\| mll3944 [Mesorhizobium loti MAFF303099], gi\|13473369\|ref\|NP_104936.1\| hy...	154.0	[0..1]	[108..1]
gi\|114667678 - gi\|114667678\|ref\|XP_001172025.1\| PREDICTED: similar to Chromosome 17 open reading frame 37 [Pan trog...	153.0	[0..1]	[115..1]
gi\|57091101 - gi\|57091101\|ref\|XP_537653.1\| PREDICTED: similar to chromosome 17 open reading frame 37 [Canis famili...	152.0	[0..1]	[115..1]
C17orf37 - chromosome 17 open reading frame 37	152.0	[0..1]	[115..1]
gi\|90076344 - gi\|90076344\|dbj\|BAE87852.1\| unnamed protein product [Macaca fascicularis] gi\|109114906 - gi\|109114906\|ref\|XP_001091012.1\| PREDICTED: similar to chromosome 17 open reading frame 37 [Macaca m...	151.0	[0..1]	[115..1]
MIEN1_BOVIN - Migration and invasion enhancer 1 OS=Bos taurus GN=MIEN1 PE=3 SV=1	149.0	[0..1]	[115..1]
gi\|15073194 - gi\|15073194\|emb\|CAC41702.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi\|15964018 - gi\|15964018\|ref\|NP_384371.1\| hypothetical protein SMc00345 [Sinorhizobium meliloti 1021]	147.0	[0..21]	[108..3]
gi\|113871296, gi... - gi\|150398651\|ref\|YP_001329118.1\| putative selenoprotein [Sinorhizobium medicae WSM419], gi\|150030166...	147.0	[0..21]	[108..3]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEPAPVSV VPPPGEVEAG SGVHIVVEYC KPCGFEATYL ELASAVKEEY PGIEIESRLG  60
   61 GTGAFEIEIN GQLVFSKLEN GGFPYEKDLM EAIRRASNGE PVEKITNSRP PCVIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	2fa8A
Description:	Crystal Structure of the Putative Selenoprotein W-related family Protein from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: