YRC Public Data Repository - Protein Structure Prediction

Protein:	HEN2_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEN2_MOUSE.

Description	E-value	Query Range	Subject Range
HEN2_MOUSE - Helix-loop-helix protein 2 OS=Mus musculus GN=Nhlh2 PE=1 SV=2	112.0	[0..1]	[135..1]
gi\|157824067, gi... - gi\|27660130\|ref\|XP_227524.1\| PREDICTED: similar to nescient helix loop helix 2 [Rattus norvegicus], ...	112.0	[0..1]	[135..1]
gi\|114558664, gi... - gi\|114558668\|ref\|XP_001148366.1\| PREDICTED: similar to helix-loop-helix protein isoform 1 [Pan trogl... NHLH2 - nescient helix loop helix 2 gi\|109014532, gi... - gi\|109014535\|ref\|XP_001112029.1\| PREDICTED: similar to Helix-loop-helix protein 2 (HEN2) (Nescient h...	111.0	[0..1]	[135..1]
gi\|73981146 - gi\|73981146\|ref\|XP_540253.2\| PREDICTED: similar to nescient helix loop helix 2 [Canis familiaris]	104.0	[0..1]	[135..203]
gi\|76612998, gi\|... - gi\|76613000\|ref\|XP_604054.2\| PREDICTED: similar to Helix-loop-helix protein 2 (HEN2) (Nescient helix...	104.0	[0..1]	[135..1]
gi\|54695320 - gi\|54695320\|emb\|CAH65602.1\| MyoD protein [Salmo salar]	98.0	[0..1]	[134..1]
MYOD1_ONCMY - Myoblast determination protein 1 homolog 1 OS=Oncorhynchus mykiss GN=myod1 PE=2 SV=1	98.0	[0..5]	[134..9]
gi\|45510881 - gi\|45510881\|gb\|AAS67038.1\| MyoD [Ictalurus furcatus]	98.0	[0..1]	[134..1]
gi\|12744734 - gi\|12744734\|gb\|AAK06755.1\|AF318503_1 Myod [Danio rerio]	98.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLSPDQAAD SDHPSSTHSD PESLGGADTK VLGSVSDLEP VEEADGDGKG GSRAVLYPHP  60
   61 QQLSREEKRR RRRATAKYRS AHATRERIRV EAFNLAFAEL RKLLPTLPPD KKLSKIEILR 120
  121 LAICYISYLN HVLDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.045757
Match:	1mdyA
Description:	Myod B/HLH domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits