YRC Public Data Repository - Protein Structure Prediction

Protein:	RT16_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT16_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109501187, gi... - ref\|XP_214132.1\| similar to mitochondrial ribosomal protein S16 [Rattus norvegicus], gi\|157817017\|re...	183.0	[0..1]	[135..1]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	176.0	[0..1]	[135..1]
RT16_PONAB - 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1 RT16_PONPY - 28S ribosomal protein S16, mitochondrial precursor - Pongo pygmaeus (Orangutan)	174.0	[0..1]	[135..1]
RT16_BOVIN - 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2	167.0	[0..1]	[133..1]
gi\|109089318 - gi\|109089318\|ref\|XP_001103151.1\| PREDICTED: mitochondrial ribosomal protein S16 [Macaca mulatta]	167.0	[0..1]	[135..1]
gi\|114631245 - gi\|114631245\|ref\|XP_508171.2\| PREDICTED: similar to CGI-132 protein [Pan troglodytes]	166.0	[0..6]	[135..126]
gi\|73953526 - gi\|73953526\|ref\|XP_852347.1\| PREDICTED: similar to mitochondrial ribosomal protein S16 [Canis famili...	161.0	[0..1]	[135..192]
gi\|89266945, gi\|... - gi\|89266945\|emb\|CAJ81716.1\| mitochondrial ribosomal protein S16 [Xenopus tropicalis], gi\|62858601\|re...	146.0	[0..1]	[122..1]
gi\|115528688, gi... - gi\|189217736\|ref\|NP_001121309.1\| hypothetical protein LOC100158393 [Xenopus laevis], gi\|115528688\|gb...	144.0	[0..1]	[123..1]
gi\|182889322, gi... - gi\|54400562\|ref\|NP_001006030.1\| mitochondrial ribosomal protein S16 [Danio rerio], gi\|53733877\|gb\|AA...	139.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQLTTIFCK AYHGGHLTIR LALGGCTNRP FYRIVAAHNK CPRDGRFVEQ LGSYDPLPNS  60
   61 HGEKLVALNL DRIRHWIGCG AHLSKPMEKL LGLSGFFPLH PMMITNAERL RRRRAREVLL 120
  121 ASQKAESEAK ETEAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1pnsP
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits