YRC Public Data Repository - Protein Structure Prediction

Protein:	TC1D2_MOUSE
Organism:	Mus musculus
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TC1D2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|157817963, gi... - gi\|62658006\|ref\|XP_573301.1\| PREDICTED: similar to CG5359-PA [Rattus norvegicus], gi\|157817963\|ref\|N...	199.0	[0..1]	[144..1]
gi\|22749513, gi\|... - gi\|22749513\|ref\|NP_689986.1\| Tctex1 domain containing 2 [Homo sapiens], gi\|18088953\|gb\|AAH21177.1\| T...	191.0	[0..1]	[144..1]
gi\|55621782 - gi\|55621782\|ref\|XP_516972.1\| PREDICTED: hypothetical protein [Pan troglodytes] TCTEX1D2 - Tctex1 domain containing 2	191.0	[0..1]	[144..1]
gi\|79156971 - gi\|79156971\|gb\|AAI08236.1\| TCTEX1D2 protein [Bos taurus]	187.0	[0..12]	[144..55]
gi\|109054279 - gi\|109054279\|ref\|XP_001100846.1\| PREDICTED: similar to CG5359-PA [Macaca mulatta]	182.0	[0..1]	[144..1]
gi\|2760163 - gi\|2760163\|dbj\|BAA24185.1\| outer arm dynein light chain 1 [Anthocidaris crassispina]	176.0	[0..1]	[143..31]
gi\|115925500, gi... - gi\|72016351\|ref\|XP_785107.1\| PREDICTED: similar to outer arm dynein light chain 1 [Strongylocentrotu...	161.0	[0..1]	[143..31]
TC1D1_MOUSE - Tctex1 domain-containing protein 1 OS=Mus musculus GN=Tctex1d1 PE=2 SV=1	160.0	[0..8]	[143..36]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFRGLSL SAHSEGLSEV DKNSGEPENT YILRPIFQQR FRPSVVKDCI HTVLKEELAS  60
   61 AEYSPDEMPQ LTKRLSEMIK DKLKELGYDR YKMVVQVVIG EQRGEGVFMA ARCFWDADTD 120
  121 NYTHDVFMND SLFCVVAAFG CFYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1xdxA
Description:	Solution Structure of the Tctex1 Light Chain From Chlamydomonas Inner Dynein Arm I1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits