YRC Public Data Repository - Protein Structure Prediction

Protein:	RM54_MOUSE
Organism:	Mus musculus
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM54_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149034435, gi... - gi\|27717591\|ref\|XP_216854.1\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Rattus norve...	210.0	[0..1]	[135..1]
MRPL54 - mitochondrial ribosomal protein L54	203.0	[0..1]	[135..1]
gi\|114674655 - gi\|114674655\|ref\|XP_001135765.1\| PREDICTED: mitochondrial ribosomal protein L54 [Pan troglodytes]	200.0	[0..1]	[135..1]
RM54_BOVIN - 39S ribosomal protein L54, mitochondrial OS=Bos taurus GN=MRPL54 PE=1 SV=1	174.0	[0..1]	[135..1]
gi\|73987447 - gi\|73987447\|ref\|XP_542170.2\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Canis famili...	170.0	[0..1]	[135..142]
gi\|29841257 - gi\|29841257\|gb\|AAP06289.1\| similar to GenBank Accession Number AE003452 CG9353 gene product in Droso...	138.0	[0..31]	[130..14]
gi\|109122929 - gi\|109122929\|ref\|XP_001100840.1\| PREDICTED: similar to mitochondrial ribosomal protein L54 [Macaca m...	127.0	[0..1]	[92..1]
gi\|94732860 - gi\|94732860\|emb\|CAK11408.1\| novel protein similar to vertebrate mitochondrial ribosomal protein L54 ...	126.0	[0..32]	[135..44]
gi\|157137317, gi... - gi\|157137317\|ref\|XP_001657017.1\| mitochondrial ribosomal protein, L54, putative [Aedes aegypti], gi\|...	115.0	[0..54]	[135..53]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAHLLRAS RVWARWHPRA LPVLRRPGGF SIREYAKKPV GKGGKGGVAA EALKDPEVCT  60
   61 DPTQLTTHAM GVNIYKEGQD VALKADSEYP TWLFQVNLGP PKKLEELEPE SREYWRLLRK 120
  121 QNIWRHNRLS KNKKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.167491
Match:	PF08561.1
Description:	No description for PF08561.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits