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View Structure Prediction Details

Protein: USE1_MOUSE
Organism: Mus musculus
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USE1_MOUSE.

Description E-value Query
Range
Subject
Range
gi|13447205 - gi|13447205|gb|AAK26661.1|AF353245_1 D12 protein [Mus musculus]
328.0 [0..1] [270..1]
gi|109503146, gi... - ref|XP_214304.2| similar to RIKEN cDNA 2010315L10 [Rattus norvegicus], gi|109503901|ref|XP_001065114...
324.0 [0..1] [270..1]
gi|109123832 - gi|109123832|ref|XP_001113101.1| PREDICTED: uncharacterized hematopoietic stem/progenitor cells prot...
308.0 [0..12] [270..1]
gi|73986054 - gi|73986054|ref|XP_865756.1| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...
305.0 [0..1] [270..1]
gi|117646422, gi... - gi|167773831|gb|ABZ92350.1| uncharacterized hematopoietic stem/progenitor cells protein MDS032 [synt...
gi|55648577 - gi|55648577|ref|XP_512478.1| PREDICTED: uncharacterized hematopoietic stem/progenitor cells protein ...
USE1 - unconventional SNARE in the ER 1 homolog (S. cerevisiae)
302.0 [0..12] [270..1]
gi|115497660, gi... - gi|76620934|ref|XP_886012.1| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...
298.0 [0..12] [270..1]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQAEGAYHR PLATSRLELN LVRLLCRCES MAAEKREPDE WRLEKYVGAL EDMLQALKVQ  60
   61 ASKPASEVIS EYSRKVDFLK GMLQAEKLTS SSEKALANQF LAPGRVPTTA KERVPATKTV 120
  121 HLQSRARYTS EMRSELLGME PSGECEVDMR KRA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.943 0.037 lysosomal transport a.24.4 Hemerythrin

Predicted Domain #2
Region A:
Residues: [154-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKGSRPADER QSASELDLVL QRHQGLQEKL AEEMLGLARS LKTNTLAAQS VIKKDNQTLS  60
   61 HSLKMADQNL EKLKLESERL EQHAQKSVNW LLWAMLIVVC FVFISMILFI RIMPRLK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.17
Match: 1l4aD
Description: Synaptosomal-assosiated protein SNAP-25
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle