YRC Public Data Repository - Protein Structure Prediction

Protein:	PMF1_MOUSE
Organism:	Mus musculus
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMF1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|12851284 - gi\|12851284\|dbj\|BAB28994.1\| unnamed protein product [Mus musculus]	355.0	[0..1]	[202..1]
gi\|109072746 - gi\|109072746\|ref\|XP_001105574.1\| PREDICTED: similar to polyamine-modulated factor 1 isoform 2 [Macac...	348.0	[0..1]	[202..1]
gi\|109467002, gi... - ref\|XP_238243.2\| similar to polyamine-modulated factor 1 [Rattus norvegicus], gi\|109467002\|ref\|XP_00...	335.0	[0..1]	[202..1]
gi\|190691809, gi... - gi\|190691809\|gb\|ACE87679.1\| polyamine-modulated factor 1 protein [synthetic construct], gi\|190690431... gi\|40787752 - gi\|40787752\|gb\|AAH65031.1\| Polyamine-modulated factor 1 [Homo sapiens]	333.0	[0..1]	[202..1]
gi\|114560244 - gi\|114560244\|ref\|XP_513878.2\| PREDICTED: similar to polyamine-modulated factor 1 [Pan troglodytes]	326.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVSRDSEA AERGPEGSSP EAVPGDATIP RVKLLDAIVD TFLQKLVADR SYERFTTCYK  60
   61 HFHQLNPEVT QRIYDKFVAQ LQTSIREEIS EIKEEGNLEA VLNSLDKIIE EGRERGEPAW 120
  121 RPSGIPEKDL CSVMAPYFLK QQDTLCHQVR KQEAKNQELA DAVLAGRRQV EELQQQVRAL 180
  181 QQTWQALHRE QRELLSVLRA PE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.16
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits