YRC Public Data Repository - Protein Structure Prediction

Protein:	THOC7_MOUSE
Organism:	Mus musculus
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THOC7_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109502196 - gi\|109502196\|ref\|XP_001069423.1\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding prot...	277.0	[0..7]	[204..247]
gi\|114587617 - gi\|114587617\|ref\|XP_528705.2\| PREDICTED: similar to THO complex 7 homolog (Drosophila) [Pan troglody...	267.0	[0..5]	[204..270]
gi\|109037775 - gi\|109037775\|ref\|XP_001090043.1\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding prot...	260.0	[0..4]	[204..159]
gi\|32449842 - gi\|32449842\|gb\|AAH54419.1\| THO complex 7 homolog (Drosophila) [Mus musculus]	244.0	[0..1]	[204..1]
gi\|48146863 - gi\|48146863\|emb\|CAG33654.1\| NIF3L1BP1 [Homo sapiens]	243.0	[0..1]	[204..1]
gi\|73985141 - gi\|73985141\|ref\|XP_533771.2\| PREDICTED: similar to Ngg1 interacting factor 3 like 1 binding protein ...	241.0	[0..4]	[204..34]
THOC7_BOVIN - THO complex subunit 7 homolog OS=Bos taurus GN=THOC7 PE=2 SV=1 THOC7 - THO complex 7 homolog (Drosophila) ENSPTRT00000028216 - null	241.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVTDDEVI RKRLLIDGDG AGDDRRINLL VKSFIKWCNS GSQEEGYSQY QRMLSTLSQC  60
   61 EFSMGKTLLV YDMNLREMEN YEKIYKEIEC SIAGAHEKIA ECKKQILQAK RIRKNRQEYD 120
  121 ALAKVIQHHP DRHETLKELE ALGKELEHLS HIKESVEDKL ELRRKQFHVL LSTIHELQQT 180
  181 LENDDKLSEV DEAQESTMEA DPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2dfsA
Description:	No description for 2dfsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits