YRC Public Data Repository - Protein Structure Prediction

Protein:	CLD1_MOUSE
Organism:	Mus musculus
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLD1_MOUSE.

Description	E-value	Query Range	Subject Range
CLD1_RAT - Claudin-1 OS=Rattus norvegicus GN=Cldn1 PE=1 SV=2	233.0	[0..1]	[211..1]
gi\|73976701 - gi\|73976701\|ref\|XP_848612.1\| PREDICTED: similar to claudin 19 (predicted) [Canis familiaris]	231.0	[0..1]	[211..92]
gi\|61889131, gi\|... - gi\|61889131\|ref\|NP_001013629.1\| claudin 1 [Gallus gallus], gi\|58414959\|gb\|AAW73082.1\| claudin-1 [Gal...	221.0	[0..1]	[211..1]
gi\|109113069, gi... - gi\|109113069\|ref\|XP_001107331.1\| PREDICTED: claudin 7 isoform 2 [Macaca mulatta], gi\|109113067\|ref\|X... CCDS11096.1_1 - null	220.0	[0..1]	[211..1]
gi\|54020932, gi\|... - gi\|54020932\|ref\|NP_001005709.1\| claudin 3 [Xenopus (Silurana) tropicalis], gi\|49523224\|gb\|AAH75291.1...	220.0	[0..3]	[211..2]
gi\|153792186, gi... - gi\|47938322\|gb\|AAH71844.1\| Claudin 7 [Homo sapiens], gi\|153792186\|ref\|NP_001298.3\| claudin 7 [Homo s...	219.0	[0..1]	[211..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANAGLQLLG FILASLGWIG SIVSTALPQW KIYSYAGDNI VTAQAIYEGL WMSCVSQSTG  60
   61 QIQCKVFDSL LNLNSTLQAT RALMVIGILL GLIAIFVSTI GMKCMRCLED DEVQKMWMAV 120
  121 IGGIIFLISG LATLVATAWY GNRIVQEFYD PLTPINARYE FGQALFTGWA AASLCLLGGV 180
  181 LLSCSCPRKT TSYPTPRPYP KPTPSSGKDY V

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	94.30103
Match:	PF00822.11
Description:	No description for PF00822.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits