YRC Public Data Repository - Protein Structure Prediction

Protein:	RNH2C_MOUSE
Organism:	Mus musculus
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNH2C_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|19353863 - gi\|19353863\|gb\|AAH24333.1\| Ribonuclease H2, subunit C [Mus musculus]	258.0	[0..1]	[166..1]
RNASEH2C - ribonuclease H2, subunit C gi\|123997603, gi... - gi\|123997603\|gb\|ABM86403.1\| AYP1 protein [synthetic construct], gi\|123982924\|gb\|ABM83203.1\| AYP1 pro...	231.0	[0..1]	[166..1]
gi\|114638606 - gi\|114638606\|ref\|XP_508559.2\| PREDICTED: AYP1 protein [Pan troglodytes]	230.0	[0..1]	[166..1]
gi\|109109538 - gi\|109109538\|ref\|XP_001085695.1\| PREDICTED: similar to AYP1 protein isoform 2 [Macaca mulatta]	227.0	[0..1]	[166..1]
gi\|73983076 - gi\|73983076\|ref\|XP_852826.1\| PREDICTED: similar to AYP1 protein isoform 1 [Canis familiaris]	206.0	[0..1]	[166..1]
RNH2C_BOVIN - Ribonuclease H2 subunit C OS=Bos taurus GN=RNASEH2C PE=2 SV=1	195.0	[0..1]	[166..1]
gi\|28923812, gi\|... - gi\|32408179\|ref\|XP_324571.1\| predicted protein [Neurospora crassa], gi\|28923812\|gb\|EAA32977.1\| predi... gi\|85106579 - gi\|85106579\|ref\|XP_962213.1\| hypothetical protein NCU05214 [Neurospora crassa OR74A]	170.0	[0..31]	[161..27]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNPEEAADG KQRIHLRPGS LRGAAPAKLH LLPCDVLVSR PAPVDRFFTP AVRHDADGLQ  60
   61 ASFRGRGLRG EEVAVPPGFA GFVMVTEEKG EGLIGKLNFS GDAEDKADEA QEPLERDFDR 120
  121 LIGATGSFSH FTLWGLETVP GPDAKVHRAL GWPSLAAAIH AQVPED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.958607
Match:	PF08615.2
Description:	No description for PF08615.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits