YRC Public Data Repository - Protein Structure Prediction

Protein:	CRBS_MOUSE
Organism:	Mus musculus
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRBS_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74005658 - gi\|74005658\|ref\|XP_545618.2\| PREDICTED: similar to Gamma crystallin B (Gamma crystallin 1-2) [Canis ...	284.0	[0..3]	[178..130]
gi\|149045973, gi... - gi\|149045973\|gb\|EDL98866.1\| rCG22235 [Rattus norvegicus], gi\|109487201\|ref\|XP_001066957.1\| PREDICTED...	278.0	[0..2]	[178..176]
gi\|76679190 - gi\|76679190\|ref\|XP_584674.2\| PREDICTED: similar to Gamma crystallin A (Gamma crystallin 1-1), partia...	271.0	[0..1]	[178..52]
CRGB_MOUSE - Gamma-crystallin B OS=Mus musculus GN=Crygb PE=2 SV=3	263.0	[0..5]	[178..1]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTGGKISF YEDRNFQGRR YDCDCDCADF RSYLSRCNSI RVEGGTWAVY ERPNFSGHMY  60
   61 ILPQGEYPEY QRWMGLNDRL GSCRAVHLSS GGQAKIQVFE KGDFNGQMYE TTEDCPSIME 120
  121 QFHLREIHSC KVVEGTWIFY ELPNYRGRQY LLDKKEYRKP VDWGAASPAI QSFRRIVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	1zwmA
Description:	NMR structure of murine gamma-S crystallin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits