YRC Public Data Repository - Protein Structure Prediction

Protein:	FAM3D_MOUSE
Organism:	Mus musculus
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAM3D_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|27674093 - gi\|27674093\|ref\|XP_214143.1\| PREDICTED: similar to oncoprotein induced transcript 1 [Rattus norvegic...	377.0	[0..1]	[223..1]
gi\|109132854 - gi\|109132854\|ref\|XP_001089464.1\| PREDICTED: similar to family 3, member A protein [Macaca mulatta]	372.0	[0..1]	[221..1]
FAM3A_PONPY - Protein FAM3A precursor - Pongo pygmaeus (Orangutan) gi\|160213467 - gi\|160213467\|gb\|ABX10995.1\| family with sequence similarity 3, member A (predicted) [Papio anubis] FAM3A_PONAB - Protein FAM3A OS=Pongo abelii GN=FAM3A PE=2 SV=1	372.0	[0..1]	[221..1]
FAM3A_MOUSE - Protein FAM3A OS=Mus musculus GN=Fam3a PE=2 SV=1	371.0	[0..1]	[221..1]
gi\|74009185 - gi\|74009185\|ref\|XP_855396.1\| PREDICTED: similar to family 3, member A protein [Canis familiaris]	367.0	[0..1]	[221..171]
FAM3D - family with sequence similarity 3, member D gi\|114587653, gi... - gi\|114587655\|ref\|XP_001174358.1\| PREDICTED: family with sequence similarity 3, member D isoform 2 [P...	364.0	[0..1]	[221..1]
gi\|147902657, gi... - gi\|27695185\|gb\|AAH43826.1\| Fam3a-prov protein [Xenopus laevis], gi\|147902657\|ref\|NP_001080471.1\| fam...	356.0	[0..1]	[221..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVAGLIRVV VFIFTIVTMW VFLRSYTSFS RKTIRLPRWL GITPKDIQTP KSKCGLSKIC  60
   61 PNNFFAFKIS SGAANVVGPS MCFEDEIIMS P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRNNVGRGLN VALVNGSTGQ VMKKDSFDMY SGDPQLLLNF LTEIPDSTLV LVASYDDPGT  60
   61 KMNDKIKTLF SNLGSSYAKQ LGFRDSWVFV GAKDLKSKSP YEQFLKNNPE TNKYDGWPEL 120
  121 LELEGCVPRK VM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.898	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits