| Protein: | SMN_MOUSE |
| Organism: | Mus musculus |
| Length: | 288 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMN_MOUSE.
| Description | E-value | Query Range |
Subject Range |
|
|
365.0 | [0..1] | [288..1] |
|
|
356.0 | [0..1] | [288..1] |
|
|
353.0 | [0..7] | [288..1] |
|
|
349.0 | [0..10] | [288..9] |
|
|
344.0 | [0..9] | [287..12] |
|
|
344.0 | [0..9] | [287..11] |
|
|
344.0 | [0..1] | [288..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MAMGSGGAGS EQEDTVLFRR GTGQSDDSDI WDDTALIKAY DKAVASFKHA LKNGDICETP 60
61 DKPKGTARRK PAKKNK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.370 | N/A | N/A | a.69.4 | Description not found. |
| View | Download | 0.234 | N/A | N/A | a.276.1 | Description not found. |
| View | Download | 0.212 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.208 | N/A | N/A | a.69.4 | Description not found. |
| View | Download | 0.204 | N/A | N/A | a.4.1 | Homeodomain-like |
|
Region A: Residues: [77-164] |
1 11 21 31 41 51
| | | | | |
1 SQKKNATTPL KQWKVGDKCS AVWSEDGCIY PATITSIDFK RETCVVVYTG YGNREEQNLS 60
61 DLLSPTCEVA NSTEQNTQEN ESQVSTDD
|
| Detection Method: | |
| Confidence: | 23.30103 |
| Match: | 1g5vA |
| Description: | Survival motor neuron protein 1, smn |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [165-288] |
1 11 21 31 41 51
| | | | | |
1 SEHSSRSLRS KAHSKSKAAP WTSFLPPPPP MPGSGLGPGK PGLKFNGPPP PPPLPPPPFL 60
61 PCWMPPFPSG PPIIPPPPPI SPDCLDDTDA LGSMLISWYM SGYHTGYYMG FRQNKKEGKC 120
121 SHTN
|
| Detection Method: | |
| Confidence: | 1.1 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
