YRC Public Data Repository - Protein Structure Prediction

Protein:	AGR2_MOUSE
Organism:	Mus musculus
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGR2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|30679394 - gi\|30679394\|ref\|NP_192229.3\| catalytic [Arabidopsis thaliana]	125.0	[0..12]	[173..60]
gi\|149051137, gi... - gi\|27662826\|ref\|XP_216691.1\| PREDICTED: similar to anterior gradient 2 [Rattus norvegicus], gi\|15782...	123.0	[0..1]	[175..1]
gi\|57096374 - gi\|57096374\|ref\|XP_539450.1\| PREDICTED: similar to anterior gradient 2 homolog [Canis familiaris]	121.0	[0..1]	[175..1]
gi\|115370384, gi... - gi\|115372663\|ref\|ZP_01459970.1\| thymidylate kinase [Stigmatella aurantiaca DW4/3-1], gi\|115370384\|gb...	121.0	[0..23]	[173..2]
AGR2_PONPY - Anterior gradient protein 2 homolog precursor - Pongo pygmaeus (Orangutan) AGR2_PONAB - Anterior gradient protein 2 homolog OS=Pongo abelii GN=AGR2 PE=2 SV=1	120.0	[0..1]	[175..1]
gi\|109067268 - gi\|109067268\|ref\|XP_001105285.1\| PREDICTED: similar to anterior gradient 2 homolog [Macaca mulatta]	120.0	[0..1]	[175..1]
gi\|7450165 - pir\|\|H69466 conserved hypothetical protein AF1737 - Archaeoglobus fulgidus gi\|11499326, gi\|... - gi\|2648814\|gb\|AAB89512.1\| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304], gi\|11499...	120.0	[0..33]	[173..3]
gi\|68012756 - gi\|68012756\|gb\|AAY84773.1\| AGR2 [Homo sapiens]	119.0	[0..1]	[175..21]
gi\|91089651 - gi\|91089651\|ref\|XP_973977.1\| PREDICTED: similar to sperm protein SSP411 [Tribolium castaneum]	119.0	[0..27]	[174..12]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKFSVSAIL LLVAISGTLA KDTTVKSGAK KDPKDSRPKL PQTLSRGWGD QLIWTQTYEE  60
   61 ALYRSKTSNR PLMVIHHLDE CPHSQALKKV FAEHKEIQKL AEQFVLLNLV YETTDKHLSP 120
  121 DGQYVPRIVF VDPSLTVRAD ITGRYSNRLY AYEPSDTALL YDNMKKALKL LKTEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1senA
Description:	Endoplasmic reticulum protein Rp19 O95881
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits