YRC Public Data Repository - Protein Structure Prediction

Protein:	M17L2_MOUSE
Organism:	Mus musculus
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for M17L2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|76621079 - gi\|76621079\|ref\|XP_876207.1\| PREDICTED: similar to CG32262-PA [Bos taurus]	236.0	[0..1]	[198..16]
gi\|30109288 - gi\|30109288\|gb\|AAH51227.1\| CDNA sequence BC051227 [Mus musculus]	235.0	[0..1]	[200..1]
gi\|34877601, gi\|... - gi\|34877601\|ref\|XP_214293.2\| PREDICTED: similar to CG32262-PA [Rattus norvegicus], gi\|157823611\|ref\|...	234.0	[0..1]	[200..1]
gi\|62202450 - gi\|62202450\|gb\|AAH93008.1\| Hypothetical protein MGC12972 [Homo sapiens]	233.0	[0..1]	[198..1]
h0012654 - null gi\|114676107 - gi\|114676107\|ref\|XP_001173861.1\| PREDICTED: similar to FKSG24 isoform 2 [Pan troglodytes] MPV17L2 - MPV17 mitochondrial membrane protein-like 2	233.0	[0..1]	[198..1]
gi\|109123926 - gi\|109123926\|ref\|XP_001114332.1\| PREDICTED: similar to CG32262-PA isoform 2 [Macaca mulatta]	231.0	[0..1]	[198..1]
gi\|73985977 - gi\|73985977\|ref\|XP_541943.2\| PREDICTED: similar to CG32262-PA isoform 1 [Canis familiaris]	221.0	[0..1]	[190..1]
gi\|59802852 - gi\|59802852\|gb\|AAX07641.1\| hypothetical protein [Magnaporthe grisea] gi\|39940356, gi\|... - gi\|39940356\|ref\|XP_359715.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA52370....	197.0	[0..8]	[200..36]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGGWRWAR KALAAGRPLF QGRALLLTNT LGCGVLMAAG DGARQVWEVR ARPGQRFSAR  60
   61 RSASMFAVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSMGPFLHFW YLWLDRLLPA SGLRSLPSVM KKVLVDQTVA SPILGVWYFL GLGSLEGQTL  60
   61 EESCQELRAK FWDFYKADWC VWPAAQLVNF LFIPSHFRVT YINGLTLGWD TYLSYLKYWV 120
  121 PEPLQTPGCA D

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.200659
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits