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View Structure Prediction Details

Protein: RPOZ_PHOPR
Organism: Photobacterium profundum
Length: 94 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOZ_PHOPR.

Description E-value Query
Range
Subject
Range
gi|90412682, gi|... - gi|90412682|ref|ZP_01220683.1| DNA-directed RNA polymerase omega subunit [Photobacterium profundum 3...
121.0 [0..1] [92..1]

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Predicted Domain #1
Region A:
Residues: [1-94]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVTVQDAV DKIGNRFDLI QIASRRARQL QTGGKDPLVP EENDKYTVIA LREIEEGLIT  60
   61 KDILDARERQ ELQEQEAAEL AAVSAIAGDH HHHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 1hqmE
Description: DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle