YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE39859
Organism: Caenorhabditis elegans
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39859.

Description E-value Query
Range
Subject
Range
CE33737 - WBGene00021820 status:Partially_confirmed TR:Q9N4S1 protein_id:AAF60757.2
182.0 [0..1] [369..20]

Back

Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVASSSQV ILPVAADSSS IGSVNTMDEV HYASTDFYIG LGLAVSSSLF IGSSFIIKKK  60
   61 ALLKLASGDT SQRASEGGYG YLREWMWWMG VITMGIGEAC NFAAYAFAPA SLVTPLGALS 120
  121 VIVTAILSSR MLNERLNLLG SIGCALCLLG STVIVIHSPK EEEVG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.43
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #2
Region A:
Residues: [166-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SMADLALKMK DAGFLIYVIL IILATGFIVV YVAPRYGHSN ILVYISVCSL IGSLSVLSET  60
   61 LAGNQQFTNW LTYFWLASVA MCVSVQLIYL NKALDIFNTS MVTPIYYVFF TTFVILASSI 120
  121 LYKEWSCLGA SDVIGNFVGF LTTIIGIFQM QLFRDVNISL YQVQRLVSRP SATLANADFS 180
  181 SSSTNLVDDY CMRQSNSNRR MVYT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 10.022276
Match: PF05653.5
Description: No description for PF05653.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle