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View Structure Prediction Details

Protein: CE39689
Organism: Caenorhabditis elegans
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39689.

Description E-value Query
Range
Subject
Range
gi|50925459, gi|... - gi|50925459|gb|AAH78772.1| Pcyt2 protein [Rattus norvegicus], gi|149055052|gb|EDM06869.1| phosphate ...
207.0 [0..1] [212..154]

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Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTKKHHME TDSILDFKSA ILPFALDPLS NEPVISVSLF KQNYTFAPVV IGRKPKVTDK  60
   61 VVYVSGAFDL FHAGHLSFLE AAKDLGDYLI VGIVGDDDVN EEKGTIFPVM NLLERTLNIS 120
  121 SLKIVDEVFV GVPAVTNSKF VNLIRASKIA VYSETHPRRF ADCTYHRIIE EVTPDYDATC 180
  181 EEILERITSR KIASSDDDEI AMFNAVPLNN NQH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1cozA
Description: CTP:glycerol-3-phosphate cytidylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.84668360172717 bayes_pls_golite062009
ligase activity 0.41353894226697 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.1911539125531 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.1911539125531 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.178548924377401 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle