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View Structure Prediction Details

Protein: ntl-2
Organism: Caenorhabditis elegans
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ntl-2.

Description E-value Query
Range
Subject
Range
ntl-2 - status:Confirmed UniProt:Q95QZ4 protein_id:AAL11099.1
379.0 [0..1] [358..10]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSDPSLTNP EFQIQNEDFP ALPGVGSGQT QRSMLGDQLA NMLADDHQVD FAGPLGDCDP  60
   61 SRLSGISRNS QE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-267]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPMHGIITHP DGEVTNIPAS MLDDQFGMAG LVTYLRTVDN PSIVSLALGY DLTTLGLNLN  60
   61 LSERKLYMNF GGPWADSPIR AHELDVKVPE EYMTHNHIRD KLPPLRLNKV SEDVLFYLFY 120
  121 NCPNEIYQVA AACELYAREW RFHKSEQVWL TRSQYGGVKE QTGNYEKGHY NVFDQMQWRK 180
  181 IPKELKLEYK ELEDR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.69897
Match: PF04153.9
Description: No description for PF04153.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [268-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKMPQSVSGQ PTPYKYFFQG PQFPSGPETG LMLQMHNLTL GTGGGGGGQI TPPAPAGLNG  60
   61 VMGGGGVGAA GIGGINVQPG AVPSAARATP N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle