YRC Public Data Repository - Protein Structure Prediction

Protein:	CFC1_MOUSE
Organism:	Mus musculus
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CFC1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|553348 - gi\|553348\|gb\|AAA52703.1\| hexabrachion [Homo sapiens]	162.0	[0..1]	[193..7]
gi\|27463074, gi\|... - gi\|47085727\|ref\|NP_998132.1\| FAT tumor suppressor homolog 1 [Danio rerio], gi\|27463074\|gb\|AAO15696.1...	159.0	[0..46]	[194..4009]
gi\|109079680 - gi\|109079680\|ref\|XP_001090815.1\| PREDICTED: similar to odd Oz/ten-m homolog 2 isoform 6 [Macaca mula...	157.0	[0..3]	[201..512]
gi\|110749089 - gi\|110749089\|ref\|XP_394215.3\| PREDICTED: similar to Tenascin major CG5723-PB isoform 1 [Apis mellife...	157.0	[0..7]	[202..1261]
gi\|73954068 - gi\|73954068\|ref\|XP_546253.2\| PREDICTED: similar to odd Oz/ten-m homolog 2 [Canis familiaris]	157.0	[0..3]	[201..505]
gi\|56800394, gi\|... - gi\|56800511\|emb\|CAI35934.1\| odd Oz\/ten-m homolog 2 (Drosophila) [Mus musculus], gi\|56800489\|emb\|CAI...	156.0	[0..3]	[201..633]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRANSPTQGI SLKMHQARPL FLVTVALQLI GLGYSYQSEG DGAREVSNIL SPVIPGTTLD  60
   61 RTLSNSSRKN DIPEGARLWD SLPDSSTLGE SAVPVSRCCH NGGTCVLGSF CVCPAYFTGR 120
  121 YCEHDQRRRD CGALGHGAWT LHSCRLCRCI FSALYCLPHQ TFSHCDLKSF LSSGARGSRE 180
  181 CSIPSLLLLV LCLLLQGVAG KG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.09691
Match:	1jv2B
Description:	Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits