YRC Public Data Repository - Protein Structure Prediction

Protein:	WBP2_MOUSE
Organism:	Mus musculus
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WBP2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	179.0	[0..30]	[260..1428]
gi\|4205086 - gi\|4205086\|gb\|AAD10951.1\| WW domain binding protein-2 [Homo sapiens]	164.0	[0..1]	[261..8]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	163.0	[0..125]	[261..1402]
gi\|50729244 - gi\|50729244\|ref\|XP_425473.1\| PREDICTED: similar to hypothetical protein [Gallus gallus]	163.0	[0..3]	[259..594]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	162.0	[0..27]	[260..1581]
gi\|76645742 - gi\|76645742\|ref\|XP_583611.2\| PREDICTED: similar to WW domain binding protein 2 isoform 1 [Bos taurus...	162.0	[0..1]	[261..1]
gi\|73964868 - gi\|73964868\|ref\|XP_849363.1\| PREDICTED: similar to WW domain binding protein 2 isoform 2 [Canis fami...	161.0	[0..1]	[261..1]
gi\|109118285 - gi\|109118285\|ref\|XP_001100942.1\| PREDICTED: similar to WW domain binding protein 2 isoform 3 [Macaca... gi\|90077220, gi\|... - gi\|90077220\|dbj\|BAE88290.1\| unnamed protein product [Macaca fascicularis], gi\|90075248\|dbj\|BAE87304....	161.0	[0..1]	[261..1]
gi\|74184100 - gi\|74184100\|dbj\|BAE37064.1\| unnamed protein product [Mus musculus]	159.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNKNHSEG GGVIVNNTES ILMSYDHVEL TFNDMKNVPE AFKGTKKGTV YLTPYRVIFL  60
   61 SKGKDAMQSF MMPFYLMKDC EIKQPVFGAN FIKGIVKAEA GGGWEGSASY KLTFTAGGAI 120
  121 EFGQRMLQVA SQASRGEVPN GAYGYPY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.14
Match:	2cayA
Description:	No description for 2cayA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.882591276559102	bayes_pls_golite062009
protein binding	0.494164145909828	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [148-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSGAYVFPP PVANGMYPCP PGYPYPPPPP EFYPGPPMMD GAMGYVQPPP PPYPGPMEPP  60
   61 VSGPSAPATP AAEAKAAEAA ASAYYNPGNP HNVYMPTSQP PPPPYYPPED KKTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: