YRC Public Data Repository - Protein Structure Prediction

Protein:	RP9_MOUSE
Organism:	Mus musculus
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RP9_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114612955 - gi\|114612955\|ref\|XP_001162346.1\| PREDICTED: hypothetical protein [Pan troglodytes]	280.0	[0..2]	[157..113]
gi\|74222240 - gi\|74222240\|dbj\|BAE26927.1\| unnamed protein product [Mus musculus]	271.0	[0..8]	[180..53]
gi\|149020408, gi... - gi\|149020408\|gb\|EDL78213.1\| retinitis pigmentosa 9 homolog (human) (predicted), isoform CRA_b [Rattu...	266.0	[0..1]	[213..1]
gi\|76615363 - gi\|76615363\|ref\|XP_872181.1\| PREDICTED: similar to Retinitis pigmentosa 9 protein homolog (Pim-1 ass...	259.0	[0..2]	[157..117]
gi\|51105880 - gi\|51105880\|gb\|EAL24464.1\| similar to RP9 protein [Homo sapiens]	259.0	[0..4]	[213..106]
gi\|109066886 - gi\|109066886\|ref\|XP_001107277.1\| PREDICTED: similar to Retinitis pigmentosa 9 protein (Pim-1-associa...	258.0	[0..2]	[157..10]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSGAGSRRP REPPEHELQR RREQKRRRHD AQQLQQLKHL ESFYEKPPPG FIKEDETKPE  60
   61 DCIPDVPGNE HAREFLAHAP TKGLWMPLGR EVKVMQCWRC KRYGHRTGDK ECPFFIKGNQ 120
  121 KLEQFRVAHE DPMYDIIREN KRHEKDVRIQ QLKQLLEDST SDDDGSSSSS SGDREKRKKR 180
  181 KKKEKHKKRK KEKKKKKKRK HKASKSSESS DSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits