YRC Public Data Repository - Protein Structure Prediction

Protein:	PLP2_MOUSE
Organism:	Mus musculus
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLP2_MOUSE.

Description	E-value	Query Range	Subject Range
PLP2 - proteolipid protein 2 (colonic epithelium-enriched)	160.0	[0..1]	[152..1]
gi\|109130707, gi... - gi\|109130707\|ref\|XP_001106080.1\| PREDICTED: proteolipid protein 2 (colonic epithelium-enriched) isof...	159.0	[0..1]	[152..1]
PLP2_RABIT - Proteolipid protein 2 OS=Oryctolagus cuniculus GN=PLP2 PE=2 SV=1	157.0	[0..1]	[152..1]
PLP2_RAT - Proteolipid protein 2 OS=Rattus norvegicus GN=Plp2 PE=2 SV=1	150.0	[0..1]	[152..1]
gi\|62027542 - gi\|62027542\|gb\|AAH92095.1\| Proteolipid protein 2 [Mus musculus]	146.0	[0..1]	[152..1]
PLP2_BOVIN - Proteolipid protein 2 OS=Bos taurus GN=PLP2 PE=2 SV=1	140.0	[0..1]	[152..1]
gi\|73961936 - gi\|73961936\|ref\|XP_537305.2\| PREDICTED: similar to Rho-associated protein kinase 1 (Rho-associated, ...	127.0	[0..1]	[138..233]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSERLSAP GCWLACTSFS RTKKGILLFA EIILCLVILI CFSASTTSAY SSLSVIEMIC  60
   61 AAVLLVFYTC DLHSKISFIN WPWTDFFRSL IATILYLITS IVVLVEGRGS SRVVAGILGL 120
  121 LATLLFGYDA YITFPLKQQR HTAAPTDPTD GP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.769551
Match:	PF01284.14
Description:	No description for PF01284.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits