YRC Public Data Repository - Protein Structure Prediction

Protein:	DDT4L_MOUSE
Organism:	Mus musculus
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DDT4L_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|17432247 - gi\|17432247\|gb\|AAL39013.1\|AF327512_1 SMHS1 [Mus musculus]	337.0	[0..1]	[193..1]
DDIT4L - DNA-damage-inducible transcript 4-like gi\|109075126, gi... - gi\|109075126\|ref\|XP_001108275.1\| PREDICTED: similar to DNA-damage-inducible transcript 4-like isofor... gi\|208968371 - gi\|208968371\|dbj\|BAG74024.1\| DNA-damage-inducible transcript 4-like [synthetic construct]	327.0	[0..1]	[191..1]
gi\|114595378, gi... - gi\|114595382\|ref\|XP_001168002.1\| PREDICTED: DNA-damage-inducible transcript 4-like isoform 2 [Pan tr...	326.0	[0..1]	[191..1]
DDT4L_RAT - DNA damage-inducible transcript 4-like protein OS=Rattus norvegicus GN=Ddit4l PE=2 SV=1	325.0	[0..1]	[193..1]
gi\|74002280 - gi\|74002280\|ref\|XP_544999.2\| PREDICTED: similar to DNA-damage-inducible transcript 4-like [Canis fam...	321.0	[0..1]	[193..1]
DDT4L_PONAB - DNA damage-inducible transcript 4-like protein OS=Pongo abelii GN=DDIT4L PE=2 SV=1 gi\|55730376 - gi\|55730376\|emb\|CAH91910.1\| hypothetical protein [Pongo abelii]	320.0	[0..1]	[191..1]
gi\|76619503 - gi\|76619503\|ref\|XP_588133.2\| PREDICTED: similar to DNA-damage-inducible transcript 4-like, partial [...	282.0	[0..1]	[170..1]
gi\|109089524 - gi\|109089524\|ref\|XP_001105457.1\| PREDICTED: similar to RTP801 [Macaca mulatta]	242.0	[0..6]	[193..483]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVATGSLSSK NPASISELLD GGYHPGSLLS DFDYWDYVVP EPNLNEVVFE ETTCQNLVKM  60
   61 LENCLSRSKQ TKLGCSKVLV PEKLTQRIAQ DVLRLSSTEP CGLRGCVMHV NLEIENVCKK 120
  121 LDRIVCDASV VPTFELTLVF KQESCPWTSL KDFFFSRGRF SSGLKRTLIL SSGFRLVKKK 180
  181 LYSLIGTTVI EEC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.275724
Match:	PF07809.2
Description:	No description for PF07809.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits