YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616891, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616891, gi....

Description	E-value	Query Range	Subject Range
gi\|13363851 - gi\|13363851\|dbj\|BAB37800.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. Sakai] gi\|117625780, gi... - gi\|117625780\|ref\|YP_859103.1\| outer membrane protein induced after carbon starvation [Escherichia co... gi\|91074572, gi\|... - gi\|91212998\|ref\|YP_542984.1\| starvation induced outer membrane protein [Escherichia coli UTI89], gi\|... gi\|209914224, gi... - gi\|209920965\|ref\|YP_002295049.1\| hypothetical protein ECSE_3774 [Escherichia coli SE11], gi\|20991422... gi\|13363851 - gi\|13363851\|dbj\|BAB37800.1\| outer membrane protein Slp [Escherichia coli O157:H7] gi\|209755656, gi... - pir\|\|B86022 outer membrane protein Slp ECs4377 [imported] - Escherichia coli (strain O157:H7, substr... gi\|30065208, gi\|... - gi\|30065208\|ref\|NP_839379.1\| outer membrane protein induced after carbon starvation [Shigella flexne... gi\|26110555, gi\|... - gi\|26250126\|ref\|NP_756166.1\| Outer membrane protein Slp precursor [Escherichia coli CFT073], gi\|2611... gi\|12518203, gi\|... - gi\|15804041\|ref\|NP_290077.1\| outer membrane protein induced after carbon starvation [Escherichia col... gi\|226902522, gi... - gi\|237703258\|ref\|ZP_04533739.1\| outer membrane protein induced after carbon starvation [Escherichia ... gi\|227839534, gi... - gi\|227883655\|ref\|ZP_04001460.1\| Slp family outer membrane lipoprotein [Escherichia coli 83972], gi\|2... gi\|56480359, gi\|... - gi\|56480359\|ref\|NP_709289.2\| outer membrane protein induced after carbon starvation [Shigella flexne... gi\|74313948, gi\|... - gi\|74313948\|ref\|YP_312367.1\| outer membrane protein induced after carbon starvation [Shigella sonnei... gi\|82545871, gi\|... - gi\|82545871\|ref\|YP_409818.1\| Slp [Shigella boydii Sb227], gi\|81247282\|gb\|ABB67990.1\| Slp [Shigella b...	326.0	[0..45]	[243..1]
gi\|1789922, gi\|4... - gi\|49176365\|ref\|NP_417963.3\| outer membrane protein induced after carbon starvation [Escherichia col... gi\|1073598, gi\|4... - gi\|466643\|gb\|AAB18482.1\| slp [Escherichia coli str. K-12 substr. MG1655], pir\|\|S47726 outer-membrane... gi\|466643\|gb\|AAB... - slp [Escherichia coli]	325.0	[0..45]	[243..1]
gi\|82778673, gi\|... - gi\|82778673\|ref\|YP_405022.1\| outer membrane protein induced after carbon starvation [Shigella dysent...	324.0	[0..45]	[243..1]
gi\|168779636, gi... - gi\|189002290\|gb\|EDU71276.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|189374617, gi... - gi\|189374617\|gb\|EDU93033.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|168753305, gi... - gi\|189358867\|gb\|EDU77286.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|75516033, gi\|... - gi\|75516033\|ref\|ZP_00738151.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|168772555, gi... - gi\|187771393\|gb\|EDU35237.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|195935024 - gi\|195935024\|ref\|ZP_03080406.1\| outer membrane protein induced after carbon starvation [Escherichia ... gi\|208727827, gi... - gi\|208808026\|ref\|ZP_03250363.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str... gi\|189380079, gi... - gi\|189380079\|gb\|EDU98495.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|169753193, gi... - gi\|170018265\|ref\|YP_001723219.1\| Slp family outer membrane lipoprotein [Escherichia coli ATCC 8739],... gi\|38704173 - gi\|38704173\|ref\|NP_312404.2\| Slp [Escherichia coli O157:H7] gi\|168746970, gi... - gi\|188018295\|gb\|EDU56417.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str. EC... gi\|218707127, gi... - gi\|218707127\|ref\|YP_002414646.1\| outer membrane lipoprotein [Escherichia coli UMN026], gi\|218434224\|... gi\|218697215, gi... - gi\|218697215\|ref\|YP_002404882.1\| outer membrane lipoprotein [Escherichia coli 55989], gi\|218353947\|e... gi\|218702262, gi... - gi\|218702262\|ref\|YP_002409891.1\| outer membrane lipoprotein [Escherichia coli IAI39], gi\|218372248\|e... gi\|209400492, gi... - gi\|209400492\|ref\|YP_002272972.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 st... gi\|215266847, gi... - gi\|215488775\|ref\|YP_002331206.1\| outer membrane lipoprotein [Escherichia coli O127:H6 str. E2348/69]... gi\|208813195, gi... - gi\|208813195\|ref\|ZP_03254524.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str... gi\|208739988, gi... - gi\|208819865\|ref\|ZP_03260185.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str... gi\|218367342, gi... - gi\|218560573\|ref\|YP_002393486.1\| outer membrane lipoprotein [Escherichia coli S88], gi\|218367342\|emb... gi\|218691783, gi... - gi\|218691783\|ref\|YP_002399995.1\| outer membrane lipoprotein [Escherichia coli ED1a], gi\|218429347\|em... gi\|124500418, gi... - gi\|124528577\|ref\|ZP_01699855.1\| outer membrane lipoprotein, Slp family [Escherichia coli B], gi\|1245... gi\|217326255, gi... - gi\|217326255\|ref\|ZP_03442339.1\| outer membrane lipoprotein, Slp family [Escherichia coli O157:H7 str... gi\|218556056, gi... - gi\|218556056\|ref\|YP_002388969.1\| outer membrane lipoprotein [Escherichia coli IAI1], gi\|218362824\|em... gi\|110345333, gi... - gi\|110643741\|ref\|YP_671471.1\| outer membrane protein Slp precursor [Escherichia coli 536], gi\|110345... gi\|38704173 - gi\|38704173\|ref\|NP_312404.2\| Slp [Escherichia coli O157:H7 str. Sakai] gi\|83571548, gi\|... - gi\|83571548\|ref\|ZP_00922988.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Shigella dy... gi\|157162984, gi... - gi\|75197425\|ref\|ZP_00707495.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|75188272, gi\|... - gi\|75188272\|ref\|ZP_00701539.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|187428367, gi... - gi\|75179867\|ref\|ZP_00699854.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Shigella bo... gi\|253322709, gi... - gi\|254290178\|ref\|YP_003055926.1\| outer membrane lipoprotein [Escherichia coli BL21(DE3)], gi\|2539794... gi\|83588636, gi\|... - gi\|83588636\|ref\|ZP_00927260.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|242379026, gi... - gi\|251786753\|ref\|YP_003001057.1\| hypothetical protein B21_03307 [Escherichia coli BL21], gi\|24237902... gi\|75260206, gi\|... - gi\|75260206\|ref\|ZP_00731474.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|254594849, gi... - gi\|254795449\|ref\|YP_003080286.1\| outer membrane lipoprotein [Escherichia coli O157:H7 str. TW14359],... gi\|191170545, gi... - gi\|75242707\|ref\|ZP_00726451.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|254163428, gi... - gi\|254163428\|ref\|YP_003046536.1\| outer membrane lipoprotein [Escherichia coli B str. REL606], gi\|253... gi\|75237447, gi\|... - gi\|75237447\|ref\|ZP_00721480.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|75231646 - gi\|75231646\|ref\|ZP_00718004.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia...	302.0	[0..56]	[243..1]
EG11890 - outer membrane lipoprotein / Outer membrane lipoprotein, stationary phase inducible; also induced by... EG11890 - outer membrane lipoprotein / Outer membrane lipoprotein, stationary phase inducible; also induced by... gi\|89110507, gi\|... - gi\|89110507\|ref\|AP_004287.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. W3110], ... gi\|169890852, gi... - gi\|170083017\|ref\|YP_001732337.1\| outer membrane lipoprotein [Escherichia coli str. K-12 substr. DH10... SLP_ECOLI - Outer membrane protein slp precursor - Escherichia coli gi\|238902595, gi... - gi\|238902595\|ref\|YP_002928391.1\| outer membrane lipoprotein [Escherichia coli BW2952], gi\|238861949\|...	301.0	[0..56]	[243..1]
gi\|75211872, gi\|... - gi\|75211872\|ref\|ZP_00711936.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia...	299.0	[0..56]	[243..1]
gi\|25305968, gi\|... - gi\|25305968\|pir\|\|AD0725 probable lipoprotein STY1949 [imported] - Salmonella enterica subsp. enteric... gi\|224583690, gi... - gi\|224583690\|ref\|YP_002637488.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|16760709 - gi\|16760709\|ref\|NP_456326.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... gi\|16420351, gi\|... - gi\|16765160\|ref\|NP_460775.1\| putative outer membrane protein [Salmonella typhimurium LT2], gi\|164203... gi\|29141533, gi\|... - gi\|29141533\|ref\|NP_804875.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Typhi... lcl\|NC_016856.1_... - [gene=slp] [protein=putative outer membrane protein] [protein_id=YP_005237760.1] [location=complemen... gi\|62180383, gi\|... - gi\|62180383\|ref\|YP_216800.1\| putative outer membrane protein [Salmonella enterica subsp. enterica se... gi\|56413262, gi\|... - gi\|56413262\|ref\|YP_150337.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Parat... gi\|205322087, gi... - gi\|205322087\|gb\|EDZ09926.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|161613671, gi... - gi\|161613671\|ref\|YP_001587636.1\| hypothetical protein SPAB_01395 [Salmonella enterica subsp. enteric... gi\|238912116 - gi\|238912116\|ref\|ZP_04655953.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Te... gi\|207856674, gi... - gi\|207856674\|ref\|YP_002243325.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|199602048, gi... - gi\|200389603\|ref\|ZP_03216214.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197940676, gi... - gi\|198246160\|ref\|YP_002215321.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|197093665, gi... - gi\|197362188\|ref\|YP_002141825.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|213855075 - gi\|213855075\|ref\|ZP_03383315.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213648048 - gi\|213648048\|ref\|ZP_03378101.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213618907 - gi\|213618907\|ref\|ZP_03372733.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|213426607 - gi\|213426607\|ref\|ZP_03359357.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Ty... gi\|205342716, gi... - gi\|205342716\|gb\|EDZ29480.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168259943, gi... - gi\|205351087\|gb\|EDZ37718.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|168241412, gi... - gi\|205339388\|gb\|EDZ26152.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|205328682, gi... - gi\|205328682\|gb\|EDZ15446.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica serovar ... gi\|197264193, gi... - gi\|197264193\|ref\|ZP_03164267.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica sero... gi\|197214965, gi... - gi\|197251262\|ref\|YP_002146204.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194410092, gi... - gi\|194451788\|ref\|YP_002045866.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser... gi\|194446640, gi... - gi\|194446640\|ref\|YP_002041076.1\| outer membrane protein Slp [Salmonella enterica subsp. enterica ser...	266.0	[0..57]	[237..6]
gi\|187429953, gi... - gi\|75177265\|ref\|ZP_00697354.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Shigella bo...	261.0	[0..57]	[237..6]
gi\|36785479, gi\|... - gi\|37526049\|ref\|NP_929393.1\| hypothetical protein plu2133 [Photorhabdus luminescens subsp. laumondii...	248.0	[0..55]	[232..6]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHTTPQNN GIELNRRDIN IRQVYVTIRH ITSESDENYK EISIMVLIFV DKDSNMNMTK  60
   61 GALILSLSFL LAACSSIPQN IKGNNQPDIQ KSFVAVHNQP GLYVGQQARF GGKVINVING 120
  121 KTDTLLEIAV LPLDSYAKPD IEANYQGRLL ARQSGFLDPV NYRNHFVTIL GTIQGEQPGF 180
  181 INKVPYNFLE VNMQGIQVWH LREVVNTTYN LWDYGYGAFW PEPGWGAPYY TNAVSQVTPE 240
  241 LVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	99.585027
Match:	PF03843.4
Description:	No description for PF03843.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits