YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616882, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616882, gi....

Description	E-value	Query Range	Subject Range
gi\|91212992, gi\|... - gi\|91212992\|ref\|YP_542978.1\| hypothetical protein UTI89_C4018 [Escherichia coli UTI89], gi\|91074566\|... gi\|237703251, gi... - gi\|237703251\|ref\|ZP_04533732.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26110549, gi\|... - gi\|26250120\|ref\|NP_756160.1\| hypothetical protein c4298 [Escherichia coli CFT073], gi\|26110549\|gb\|AA...	521.0	[0..1]	[297..1]
gi\|157080855, gi... - gi\|75188266\|ref\|ZP_00701533.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ...	485.0	[0..18]	[297..1]
gi\|189364758, gi... - gi\|189364758\|gb\|EDU83177.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4486], gi\|... gi\|189369557, gi... - gi\|189369557\|gb\|EDU87973.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4501], gi\|... gi\|189358903, gi... - gi\|189358903\|gb\|EDU77322.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4401], gi\|... gi\|188018296, gi... - gi\|188018296\|gb\|EDU56418.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4113], gi\|... gi\|195935017 - gi\|195935017\|ref\|ZP_03080399.1\| hypothetical protein EscherichcoliO157_00935 [Escherichia coli O157:... gi\|168797314, gi... - gi\|189379912\|gb\|EDU98328.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC508], gi\|1... gi\|254795442, gi... - gi\|254795442\|ref\|YP_003080279.1\| predicted DNA (exogenous) processing protein [Escherichia coli O157... gi\|168779627, gi... - gi\|189002643\|gb\|EDU71629.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4076], gi\|... gi\|168772564, gi... - gi\|187771674\|gb\|EDU35518.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4196], gi\|... gi\|15833625, gi\|... - gi\|15833625\|ref\|NP_312398.1\| hypothetical protein ECs4371 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209755700, gi... - pir\|\|C86021 hypothetical protein yhiR [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|209157407, gi... - gi\|209396007\|ref\|YP_002272965.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4115]... gi\|208818608, gi... - gi\|208818608\|ref\|ZP_03258928.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4042],... gi\|15804034, gi\|... - gi\|15804034\|ref\|NP_290070.1\| hypothetical protein Z4899 [Escherichia coli O157:H7 EDL933], gi\|125181... gi\|208814596, gi... - gi\|208814596\|ref\|ZP_03255925.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4045],... gi\|15833625, gi\|... - gi\|15833625\|ref\|NP_312398.1\| hypothetical protein ECs4371 [Escherichia coli O157:H7], gi\|13363845\|db... gi\|208728286, gi... - gi\|208808485\|ref\|ZP_03250822.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. EC4206],... gi\|217321405, gi... - gi\|217325184\|ref\|ZP_03441268.1\| DNA utilization protein YhiR [Escherichia coli O157:H7 str. TW14588]...	485.0	[0..18]	[297..1]
gi\|213999888 - gi\|213999888\|ref\|ZP_03410623.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica se... gi\|213865322 - gi\|213865322\|ref\|ZP_03387441.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica se... gi\|224469917, gi... - gi\|224585389\|ref\|YP_002639188.1\| hypothetical protein SPC_3666 [Salmonella enterica subsp. enterica ... gi\|197265667, gi... - gi\|197265667\|ref\|ZP_03165741.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica se... gi\|194735285, gi... - gi\|194735285\|ref\|YP_002116532.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica s... gi\|213647710 - gi\|213647710\|ref\|ZP_03377763.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica se... gi\|213053402 - gi\|213053402\|ref\|ZP_03346280.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica se... gi\|205330689, gi... - gi\|205330689\|gb\|EDZ17453.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica serova... gi\|205325797, gi... - gi\|205325797\|gb\|EDZ13636.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica serova... gi\|168465119, gi... - gi\|195632088\|gb\|EDX50572.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica serova... gi\|197291633, gi... - gi\|197291633\|gb\|EDY30985.1\| DNA utilization protein YhiR [Salmonella enterica subsp. enterica serova... gi\|16422158, gi\|... - gi\|16766882\|ref\|NP_462497.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16422158\|... gi\|62129728, gi\|... - gi\|62182095\|ref\|YP_218512.1\| hypothetical protein SC3525 [Salmonella enterica subsp. enterica serova... gi\|29144190, gi\|... - gi\|29144190\|ref\|NP_807532.1\| hypothetical protein t3919 [Salmonella enterica subsp. enterica serovar... gi\|25348415, gi\|... - gi\|25348415\|pir\|\|AG0987 conserved hypothetical protein STY4206 [imported] - Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=yhiR] [protein=putative cytoplasmic protein] [protein_id=YP_005239810.1] [location=3781347..37... gi\|16762703 - gi\|16762703\|ref\|NP_458320.1\| hypothetical protein STY4206 [Salmonella enterica subsp. enterica serov...	484.0	[0..18]	[297..1]
gi\|81242827, gi\|... - gi\|82778679\|ref\|YP_405028.1\| hypothetical protein SDY_3563 [Shigella dysenteriae Sd197], gi\|81242827...	483.0	[0..18]	[297..1]
gi\|117625777, gi... - gi\|117625777\|ref\|YP_859100.1\| putative DNA (exogenous) processing protein [Escherichia coli APEC O1]... gi\|218362815, gi... - gi\|218556047\|ref\|YP_002388960.1\| putative DNA (exogenous) processing protein [Escherichia coli IAI1]... gi\|218367337, gi... - gi\|218560568\|ref\|YP_002393481.1\| putative DNA (exogenous) processing protein [Escherichia coli S88],... gi\|170517423, gi... - gi\|170679705\|ref\|YP_001745754.1\| DNA utilization protein YhiR [Escherichia coli SMS-3-5], gi\|1705174... gi\|218707116, gi... - gi\|218707116\|ref\|YP_002414635.1\| putative DNA (exogenous) processing protein [Escherichia coli UMN02... gi\|218429342, gi... - gi\|218691778\|ref\|YP_002399990.1\| putative DNA (exogenous) processing protein [Escherichia coli ED1a]... gi\|110643736, gi... - gi\|110643736\|ref\|YP_671466.1\| hypothetical protein ECP_3589 [Escherichia coli 536], gi\|110345328\|gb\|... gi\|218697205, gi... - gi\|218697205\|ref\|YP_002404872.1\| putative DNA (exogenous) processing protein [Escherichia coli 55989... gi\|194435651, gi... - gi\|83588643\|ref\|ZP_00927267.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|75211866, gi\|... - gi\|75211866\|ref\|ZP_00711930.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|251786747, gi... - gi\|251786747\|ref\|YP_003001051.1\| hypothetical protein B21_03301 [Escherichia coli BL21], gi\|24237902... gi\|194420670, gi... - gi\|83571556\|ref\|ZP_00922996.1\| COG2961: Protein involved in catabolism of external DNA [Shigella dys... gi\|227883648, gi... - gi\|227883648\|ref\|ZP_04001453.1\| competence protein J [Escherichia coli 83972], gi\|227839527\|gb\|EEJ49... gi\|191170591, gi... - gi\|75242710\|ref\|ZP_00726454.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|253975323, gi... - gi\|254163422\|ref\|YP_003046530.1\| predicted DNA (exogenous) processing protein [Escherichia coli B st... gi\|192932619, gi... - gi\|75260212\|ref\|ZP_00731480.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|253979479, gi... - gi\|254290172\|ref\|YP_003055920.1\| predicted DNA (exogenous) processing protein [Escherichia coli BL21... gi\|190904677, gi... - gi\|75231652\|ref\|ZP_00718010.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|192958182, gi... - gi\|75237441\|ref\|ZP_00721474.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|74314096, gi\|... - gi\|74314096\|ref\|YP_312515.1\| hypothetical protein SSON_3734 [Shigella sonnei Ss046], gi\|73857573\|gb\|... gi\|81247274, gi\|... - gi\|82545863\|ref\|YP_409810.1\| hypothetical protein SBO_3497 [Shigella boydii Sb227], gi\|81247274\|gb\|A...	483.0	[0..18]	[297..1]
gi\|187732108, gi... - gi\|75179941\|ref\|ZP_00699928.1\| COG2961: Protein involved in catabolism of external DNA [Shigella boy...	482.0	[0..18]	[297..1]
gi\|56415502, gi\|... - gi\|56415502\|ref\|YP_152577.1\| hypothetical protein SPA3454 [Salmonella enterica subsp. enterica serov... gi\|197364430, gi... - gi\|197364430\|ref\|YP_002144067.1\| hypothetical protein SSPA3226 [Salmonella enterica subsp. enterica ...	481.0	[0..18]	[297..1]
gi\|124528583, gi... - gi\|124528583\|ref\|ZP_01699861.1\| protein of unknown function DUF519 [Escherichia coli B], gi\|12450042... gi\|238902588, gi... - gi\|238902588\|ref\|YP_002928384.1\| putative DNA (exogenous) processing protein [Escherichia coli BW295... YHIR_ECOLI - Hypothetical protein yhiR - Escherichia coli EG12234 - 23S rRNA m(6)A2030 methyltransferase, SAM-dependent / 23S rRNA m(6)A2030 methyltransferase, SAM-depe... EG12234 - 23S rRNA m(6)A2030 methyltransferase, SAM-dependent / 23S rRNA m(6)A2030 methyltransferase, SAM-depe... gi\|170083010, gi... - gi\|170083010\|ref\|YP_001732330.1\| DNA (exogenous) processing protein [Escherichia coli str. K-12 subs... gi\|169753199, gi... - gi\|170018271\|ref\|YP_001723225.1\| hypothetical protein EcolC_0217 [Escherichia coli ATCC 8739], gi\|16... gi\|85676545, gi\|... - gi\|89110514\|ref\|AP_004294.1\| predicted DNA (exogenous) processing protein [Escherichia coli str. K-1... gi\|188488648, gi... - gi\|75516038\|ref\|ZP_00738156.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ... gi\|75197420, gi\|... - gi\|75197420\|ref\|ZP_00707490.1\| COG2961: Protein involved in catabolism of external DNA [Escherichia ...	480.0	[0..18]	[297..1]
gi\|56383907, gi\|... - gi\|56480356\|ref\|NP_709279.2\| hypothetical protein SF3530 [Shigella flexneri 2a str. 301], gi\|5638390... gi\|30043480, gi\|... - gi\|30065218\|ref\|NP_839389.1\| hypothetical protein S4238 [Shigella flexneri 2a str. 2457T], gi\|300434...	479.0	[0..18]	[297..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCAPNTGQFL LTGTPLPMLS YRHSFHAGNH ADVLKHTVQS LIIESLKEKD KPFLYLDTHA  60
   61 GAGRYQLGSE HAERTGEYLE GIARIWQQDD LPAELEAYIN VVKHFNRSGQ LRYYPGSPLI 120
  121 ARQLLREQDS LQLTELHPSD YPLLRSGFQK DSRARVEKAD GFQQLKAKLP PVSRRGLILI 180
  181 DPPYEMKTDY QAVVSGIAEG YKRFATGTYA LWYPVVLRQQ IKRMIHDLEA TGIRKILQIE 240
  241 LAVLPDSDRR GMTASGMIVI NPPWKLEQQM NNVLSWLHSK LVPAGTGHAT VSWIVPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.69897
Match:	2oo3A
Description:	No description for 2oo3A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	0.999964866871553	bayes_pls_golite062009
methyltransferase activity	0.558878917426836	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.557560946446304	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.0605581837493382	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: