YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616790, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616790, gi....

Description	E-value	Query Range	Subject Range
gi\|26110440, gi\|... - gi\|26250011\|ref\|NP_756051.1\| hypothetical protein c4187 [Escherichia coli CFT073], gi\|26110440\|gb\|AA...	143.0	[0..1]	[81..1]
gi\|195632517, gi... - gi\|195632517\|gb\|EDX51001.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... FEOC_SALHS - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella heidelberg (strain SL476) GN=feoC ... gi\|194454913, gi... - gi\|194468549\|ref\|ZP_03074533.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALSV - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella schwarzengrund (strain CVM19633) G... gi\|205333082, gi... - gi\|205333082\|gb\|EDZ19846.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|197291466, gi... - gi\|197291466\|gb\|EDY30818.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... FEOC_SALTY - Ferrous iron transport protein C OS=Salmonella typhimurium GN=feoC PE=3 SV=1 gi\|168241648, gi... - gi\|205338872\|gb\|EDZ25636.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... FEOC_SALTI - Ferrous iron transport protein C OS=Salmonella typhi GN=feoC PE=3 SV=1 gi\|168260768, gi... - gi\|205350163\|gb\|EDZ36794.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205330776, gi... - gi\|205330776\|gb\|EDZ17540.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|238910488 - gi\|238910488\|ref\|ZP_04654325.1\| hypothetical protein SentesTe_05034 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=yhgG] [protein=putative cytoplasmic protein] [protein_id=YP_005239709.1] [location=3680365..36... gi\|213616169 - gi\|213616169\|ref\|ZP_03371995.1\| hypothetical protein SentesTyp_17549 [Salmonella enterica subsp. ent... gi\|213852066 - gi\|213852066\|ref\|ZP_03381598.1\| hypothetical protein SentesT_03812 [Salmonella enterica subsp. enter... gi\|214000243 - gi\|214000243\|ref\|ZP_03410978.1\| hypothetical protein Salmonellentericaenterica_06156 [Salmonella ent... gi\|213022701 - gi\|213022701\|ref\|ZP_03337148.1\| hypothetical protein Salmonelentericaenterica_08738 [Salmonella ente... gi\|213163100 - gi\|213163100\|ref\|ZP_03348810.1\| hypothetical protein Salmoneentericaenterica_24978 [Salmonella enter... FEOC_SALPB - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi B (strain ATCC BAA-1250 ... gi\|213419713 - gi\|213419713\|ref\|ZP_03352779.1\| hypothetical protein Salmonentericaenterica_18733 [Salmonella enteri... gi\|213426882 - gi\|213426882\|ref\|ZP_03359632.1\| hypothetical protein SentesTyphi_15500 [Salmonella enterica subsp. e... gi\|197262700, gi... - gi\|197262700\|ref\|ZP_03162774.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALPK - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi A (strain AKU_12601) GN=... gi\|199604655, gi... - gi\|200387557\|ref\|ZP_03214169.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|204322060, gi... - gi\|204928627\|ref\|ZP_03219826.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... FEOC_SALTI - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella typhi GN=feoC PE=3 SV=1 gi\|16762780 - gi\|16762780\|ref\|NP_458397.1\| hypothetical protein STY4289 [Salmonella enterica subsp. enterica serov... FEOC_SALPA - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi A (strain ATCC 9150 / SA... FEOC_SALTY - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella typhimurium (strain LT2 / SGSC1412... gi\|29144267, gi\|... - gi\|29144267\|ref\|NP_807609.1\| hypothetical protein t3999 [Salmonella enterica subsp. enterica serovar... FEOC_SALPB - Ferrous iron transport protein C OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=feoC PE=... FEOC_SALPA - Ferrous iron transport protein C OS=Salmonella paratyphi A GN=feoC PE=3 SV=1 FEOC_SALTY - Ferrous iron transport protein C OS=Salmonella typhimurium GN=feoC PE=3 SV=1	140.0	[0..4]	[81..1]
FEOC_ECOL6 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ... gi\|75241499, gi\|... - gi\|75241499\|ref\|ZP_00725344.1\| hypothetical protein EcolF_01001505 [Escherichia coli F11], gi\|191171... gi\|237703141, gi... - gi\|237703141\|ref\|ZP_04533622.1\| ferrous iron transporter C [Escherichia sp. 3_2_53FAA], gi\|226902405... gi\|227839423, gi... - gi\|227883544\|ref\|ZP_04001349.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783942... FEOC_ECOUT - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain UTI89 / UPEC) GN=feo... FEOC_ECO81 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O81 (strain ED1a) GN=feoC PE... FEOC_ECOL6 - Ferrous iron transport protein C OS=Escherichia coli O6 GN=feoC PE=3 SV=2 FEOC_ECOL5 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O6:K15:H31 (strain 536 / UPE... FEOC_ECOK1 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O1:K1 / APEC GN=feoC PE=3 SV... FEOC_ECO45 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O45:K1 (strain S88 / ExPEC) ...	138.0	[0..4]	[81..1]
gi\|251786660, gi... - gi\|251786660\|ref\|YP_003000964.1\| hypothetical protein B21_03214 [Escherichia coli BL21], gi\|24237893... gi\|253975239, gi... - gi\|254163338\|ref\|YP_003046446.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... FEOC_SHIFL - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella flexneri GN=feoC PE=3 SV=4 gi\|253979395, gi... - gi\|254290088\|ref\|YP_003055836.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... FEOC_SHIF8 - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella flexneri serotype 5b (strain 8401) G... FEOC_SHISS - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella sonnei (strain Ss046) GN=feoC PE=3 S... gi\|56480333, gi\|... - gi\|56480333\|ref\|NP_709183.2\| hypothetical protein SF3429 [Shigella flexneri 2a str. 301], gi\|5638388... FEOC_ECOSE - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain SE11) GN=feoC PE=3 S... gi\|124528183, gi... - gi\|124528183\|ref\|ZP_01699516.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500838\|gb... FEOC_ECOHS - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O9:H4 (strain HS) GN=feoC PE... gi\|188492911, gi... - gi\|75516122\|ref\|ZP_00738240.1\| hypothetical protein Ecol5_01000182 [Escherichia coli 53638], gi\|1884... gi\|30065307, gi\|... - gi\|30065307\|ref\|NP_839478.1\| hypothetical protein S4334 [Shigella flexneri 2a str. 2457T], gi\|300435... gi\|83571669, gi\|... - gi\|83571669\|ref\|ZP_00923109.1\| hypothetical protein Sdys1_01000385 [Shigella dysenteriae 1012], gi\|1... gi\|83588725, gi\|... - gi\|83588725\|ref\|ZP_00927349.1\| hypothetical protein Ecol1_01000358 [Escherichia coli 101-1], gi\|1944... FEOC_ECOLC - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain ATCC 8739 / DSM 1576...	138.0	[0..4]	[81..1]
FEOC_SHIB3 - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella boydii serotype 18 (strain CDC 3083-... gi\|194427018, gi... - gi\|75211776\|ref\|ZP_00711840.1\| hypothetical protein EcolB_01001132 [Escherichia coli B171], gi\|19442... gi\|190902045, gi... - gi\|75228935\|ref\|ZP_00715527.1\| hypothetical protein EcolB7_01002772 [Escherichia coli B7A], gi\|19116... gi\|193068791, gi... - gi\|75237011\|ref\|ZP_00721067.1\| hypothetical protein EcolE1_01001842 [Escherichia coli E110019], gi\|1... FEOC_ECO57 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O157:H7 GN=feoC PE=3 SV=1 gi\|75260301, gi\|... - gi\|75260301\|ref\|ZP_00731569.1\| hypothetical protein EcolE2_01000189 [Escherichia coli E22], gi\|19306... FEOC_SHIDS - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella dysenteriae serotype 1 (strain Sd197... FEOC_ECOBW - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain K12 / MC4100 / BW295... FEOC_SHIBS - Probable [Fe-S]-dependent transcriptional repressor OS=Shigella boydii serotype 4 (strain Sb227) GN=... gi\|253322805, gi... - gi\|253771761\|ref\|YP_003034592.1\| Protein of unknown function DUF1920 [Escherichia coli BL21(DE3)], g... YHGG_ECOLI - Protein yhgG - Escherichia coli gi\|89110600, gi\|... - gi\|89110600\|ref\|AP_004380.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|254594725, gi... - gi\|254795325\|ref\|YP_003080162.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... EG12933 - putative DNA-binding transcriptional regulator / Putative Fe-S-sensing transcriptional regulator for... gi\|189359241, gi... - gi\|189359241\|gb\|EDU77660.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168747112, gi... - gi\|188018291\|gb\|EDU56413.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189364736, gi... - gi\|189364736\|gb\|EDU83155.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189369498, gi... - gi\|189369498\|gb\|EDU87914.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189002578, gi... - gi\|189002578\|gb\|EDU71564.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772698, gi... - gi\|187771620\|gb\|EDU35464.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|217322270, gi... - gi\|217326049\|ref\|ZP_03442133.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|15833506, gi\|... - gi\|15833506\|ref\|NP_312279.1\| hypothetical protein ECs4252 [Escherichia coli O157:H7 str. Sakai], gi\|... FEOC_ECO5E - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O157:H7 (strain EC4115 / EHE... FEOC_ECO8A - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O8 (strain IAI1) GN=feoC PE=... FEOC_ESCF3 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia fergusonii (strain ATCC 35469 / D... FEOC_ECO55 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain 55989 / EAEC) GN=feo... gi\|189380074, gi... - gi\|189380074\|gb\|EDU98490.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189374563, gi... - gi\|189374563\|gb\|EDU92979.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... FEOC_ECOSM - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=... FEOC_ECODH - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli (strain K12 / DH10B) GN=feoC... gi\|208727301, gi... - gi\|208807500\|ref\|ZP_03249837.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195934899 - gi\|195934899\|ref\|ZP_03080281.1\| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str.... gi\|208740030, gi... - gi\|208819907\|ref\|ZP_03260227.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208814471, gi... - gi\|208814471\|ref\|ZP_03255800.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|15803914, gi\|... - gi\|15803914\|ref\|NP_289950.1\| hypothetical protein Z4765 [Escherichia coli O157:H7 EDL933], gi\|125180... EG12933 - putative DNA-binding transcriptional regulator / Putative Fe-S-sensing transcriptional regulator for...	137.0	[0..4]	[81..1]
FEOC_SALNS - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella newport (strain SL254) GN=feoC PE=... FEOC_SALCH - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella choleraesuis (strain SC-B67) GN=fe... gi\|168818680, gi... - gi\|205344576\|gb\|EDZ31340.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|205325664, gi... - gi\|205325664\|gb\|EDZ13503.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... FEOC_SALCH - Ferrous iron transport protein C OS=Salmonella choleraesuis GN=feoC PE=3 SV=1 FEOC_SALCH - Ferrous iron transport protein C OS=Salmonella choleraesuis GN=feoC PE=3 SV=1 FEOC_SALPC - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella paratyphi C (strain RKS4594) GN=fe... FEOC_SALEP - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella enteritidis PT4 (strain P125109) G... FEOC_SALG2 - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella gallinarum (strain 287/91 / NCTC 1... FEOC_SALDC - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella dublin (strain CT_02021853) GN=feo... FEOC_SALA4 - Probable [Fe-S]-dependent transcriptional repressor OS=Salmonella agona (strain SL483) GN=feoC PE=3 ...	137.0	[0..4]	[81..1]
FEOC_ECO24 - Probable [Fe-S]-dependent transcriptional repressor OS=Escherichia coli O139:H28 (strain E24377A / E...	136.0	[0..4]	[81..1]
gi\|167426516, gi... - gi\|167426516\|ref\|ZP_02318269.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229836389, gi... - gi\|229836389\|ref\|ZP_04456556.1\| hypothetical protein YPS_0279 [Yersinia pestis Pestoides A], gi\|2297... gi\|16120474, gi\|... - gi\|218927342\|ref\|YP_002345217.1\| hypothetical protein YPO0131 [Yersinia pestis CO92], gi\|16120474\|re... gi\|167419335, gi... - gi\|167419335\|ref\|ZP_02311088.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229839986, gi... - gi\|229839986\|ref\|ZP_04460145.1\| hypothetical protein YPH_2315 [Yersinia pestis biovar Orientalis str... FEOC_YERPY - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pseudotuberculosis serotype O:3 (str... gi\|229690377, gi... - gi\|229842067\|ref\|ZP_04462222.1\| hypothetical protein YPF_0398 [Yersinia pestis biovar Orientalis str... gi\|167468688 - gi\|167468688\|ref\|ZP_02333392.1\| hypothetical protein YpesF_12489 [Yersinia pestis FV-1] FEOC_YERPB - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pseudotuberculosis serotype IB (stra... FEOC_YERP3 - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pseudotuberculosis serotype O:1b (st... FEOC_YERPP - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pestis (strain Pestoides F) GN=feoC ... gi\|166010448, gi... - gi\|166010448\|ref\|ZP_02231346.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165919988, gi... - gi\|165928039\|ref\|ZP_02223871.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167051675, gi... - gi\|167399171\|ref\|ZP_02304695.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166204231, gi... - gi\|166214576\|ref\|ZP_02240611.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149290221, gi... - gi\|150260813\|ref\|ZP_01917541.1\| hypothetical protein YPE_3135 [Yersinia pestis CA88-4125], gi\|149290... FEOC_YERPA - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pestis bv. Antiqua (strain Antiqua) ... FEOC_YERPN - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pestis bv. Antiqua (strain Nepal516)... FEOC_YERPS - Ferrous iron transport protein C OS=Yersinia pseudotuberculosis GN=feoC PE=3 SV=1 gi\|22127780, gi\|... - gi\|22127780\|ref\|NP_671203.1\| ferrous iron transport protein B [Yersinia pestis KIM], gi\|21960908\|gb\|... FEOC_YERPE - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pestis GN=feoC PE=3 SV=1 FEOC_YERPS - Probable [Fe-S]-dependent transcriptional repressor OS=Yersinia pseudotuberculosis serotype I (strai... gi\|45439994, gi\|... - gi\|45439994\|ref\|NP_991533.1\| hypothetical protein YP_0132 [Yersinia pestis biovar Microtus str. 9100... gi\|165915732, gi... - gi\|89105819\|ref\|ZP_01178332.1\| hypothetical protein Ypesb_01000190 [Yersinia pestis biovar Orientali...	114.0	[0..4]	[72..1]
gi\|77956151, gi\|... - gi\|77956151\|ref\|ZP_00820285.1\| hypothetical protein YberA_01003578 [Yersinia bercovieri ATCC 43970],...	107.0	[0..4]	[71..1]
gi\|77978694, gi\|... - gi\|77978694\|ref\|ZP_00834120.1\| hypothetical protein YintA_01001568 [Yersinia intermedia ATCC 29909],...	107.0	[0..4]	[70..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLMASLIQV RDLLALRGRM EATQISQTLN TPQPMINAML QQLESMGKAV RIQEEPDGCL  60
   61 SGSCKSCPEG KACLREWWAL R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.221849
Match:	1xn7A
Description:	Solution Structure of E.Coli Protein yhgG: The Northeast Structural Genomics Consortium Target ET95
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits