YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110616361, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110616361, gi....

Description	E-value	Query Range	Subject Range
gi\|110643059, gi... - gi\|110643059\|ref\|YP_670789.1\| putative ligase [Escherichia coli 536], gi\|110344651\|gb\|ABG70888.1\| pu...	335.0	[0..1]	[248..1]
gi\|26249328, gi\|... - gi\|26249328\|ref\|NP_755368.1\| putative ligase [Escherichia coli CFT073], gi\|26109736\|gb\|AAN81941.1\|AE... gi\|91212291, gi\|... - gi\|91212291\|ref\|YP_542277.1\| putative ligase [Escherichia coli UTI89], gi\|91073865\|gb\|ABE08746.1\| hy... gi\|117625141, gi... - gi\|117625141\|ref\|YP_854129.1\| putative ligase [Escherichia coli APEC O1], gi\|115514265\|gb\|ABJ02340.1...	334.0	[0..1]	[248..1]
gi\|192930785, gi... - gi\|193063508\|ref\|ZP_03044597.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli E22], gi\|... gi\|208725708, gi... - gi\|208805907\|ref\|ZP_03248244.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|189403793, gi... - gi\|189403793\|ref\|ZP_02785050.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7] gi\|189404764, gi... - gi\|189404764\|ref\|ZP_02810768.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|209160736, gi... - gi\|209399336\|ref\|YP_002272387.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 ... gi\|217319900, gi... - gi\|217327533\|ref\|ZP_03443616.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208735489, gi... - gi\|208814212\|ref\|ZP_03255541.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208819943, gi... - gi\|208819943\|ref\|ZP_03260263.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|170018843, gi... - gi\|170018843\|ref\|YP_001723797.1\| putative ligase [Escherichia coli ATCC 8739], gi\|169753771\|gb\|ACA76... gi\|194424183, gi... - gi\|83587693\|ref\|ZP_00926320.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli 101-... gi\|189401951, gi... - gi\|189401951\|ref\|ZP_02778860.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|194415490, gi... - gi\|75212474\|ref\|ZP_00712498.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B171... gi\|189402865, gi... - gi\|189402865\|ref\|ZP_02791915.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|75228579, gi\|... - gi\|75228579\|ref\|ZP_00715208.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B7A]... gi\|188024584, gi... - gi\|188024584\|ref\|ZP_02772628.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|192959432, gi... - gi\|75239520\|ref\|ZP_00723491.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli E110... gi\|189010397, gi... - gi\|189010397\|ref\|ZP_03006309.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7 str. Sakai] gi\|33347709\|ref\|... - putative ligase [Escherichia coli K12], putative ligase [Escherichia coli K12], 5-formyltetrahydrofo...	263.0	[0..49]	[248..1]
gi\|190907936, gi... - gi\|75241292\|ref\|ZP_00725154.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli F11]... gi\|253772248, gi... - gi\|253772248\|ref\|YP_003035079.1\| 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli BL21(DE3)],... gi\|170683068, gi... - gi\|170683068\|ref\|YP_001745065.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli SMS-3-5]...	261.0	[0..49]	[248..1]
gi\|71280724, gi\|... - gi\|71280724\|ref\|YP_270316.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Colwellia psychre...	240.0	[0..60]	[248..3]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	240.0	[0..58]	[248..3]
gi\|165923168, gi... - gi\|165924968\|ref\|ZP_02220800.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Ori... gi\|229697191, gi... - gi\|229840825\|ref\|ZP_04460984.1\| predicted ligase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229690925, gi... - gi\|229842615\|ref\|ZP_04462770.1\| predicted ligase [Yersinia pestis biovar Orientalis str. India 195],... gi\|166206102, gi... - gi\|166212810\|ref\|ZP_02238845.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Ant... gi\|165990842, gi... - gi\|166010356\|ref\|ZP_02231254.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Ant... gi\|167418930, gi... - gi\|167418930\|ref\|ZP_02310683.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Ori... gi\|167050600, gi... - gi\|167399892\|ref\|ZP_02305410.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Ant... gi\|167055732, gi... - gi\|167425332\|ref\|ZP_02317085.1\| 5,10-methenyltetrahydrofolate synthetase [Yersinia pestis biovar Med... gi\|165914708, gi... - gi\|89104318\|ref\|ZP_01176864.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Yersinia pestis biova... gi\|108778264, gi... - gi\|108806351\|ref\|YP_650267.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Yersini... gi\|108813272, gi... - gi\|229903729\|ref\|ZP_04518842.1\| predicted ligase [Yersinia pestis Nepal516], gi\|229679499\|gb\|EEO7560... gi\|162354641, gi... - gi\|77635841\|ref\|ZP_00797921.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Yersinia pestis Angol... gi\|25302309 - pir\|\|AB0112 probable 5-formyltetrahydrofolate cyclo-ligase-family protein YPO0913 [imported] - Yersi... gi\|45438213, gi\|... - gi\|45443344\|ref\|NP_994883.1\| putative 5-formyltetrahydrofolatecyclo-ligase-family protein [Yersinia ... gi\|22127176, gi\|... - gi\|22127176\|ref\|NP_670599.1\| ligase [Yersinia pestis KIM], gi\|21960240\|gb\|AAM86850.1\|AE013931_3 puta... gi\|16121218, gi\|... - gi\|218928086\|ref\|YP_002345961.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Yers... gi\|149367077, gi... - gi\|149367077\|ref\|ZP_01889110.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Yersi... gi\|145209604, gi... - gi\|145597908\|ref\|YP_001161984.1\| 5-formyltetrahydrofolate cyclo-ligase-family protein [Yersinia pest... gi\|229837601, gi... - gi\|229837601\|ref\|ZP_04457763.1\| predicted ligase [Yersinia pestis Pestoides A], gi\|229704289\|gb\|EEO9...	240.0	[0..52]	[248..1]
gi\|85675723, gi\|... - gi\|89109690\|ref\|AP_003470.1\| predicted ligase [Escherichia coli str. K-12 substr. W3110], gi\|8567572... gi\|73856946, gi\|... - gi\|74313469\|ref\|YP_311888.1\| putative ligase [Shigella sonnei Ss046], gi\|73856946\|gb\|AAZ89653.1\| put... gi\|82545467, gi\|... - gi\|82545467\|ref\|YP_409414.1\| putative ligase [Shigella boydii Sb227], gi\|81246878\|gb\|ABB67586.1\| put... gi\|170082471, gi... - gi\|170082471\|ref\|YP_001731791.1\| ligase [Escherichia coli str. K-12 substr. DH10B], gi\|169890306\|gb\|... gi\|209920365, gi... - gi\|209920365\|ref\|YP_002294449.1\| putative ligase [Escherichia coli SE11], gi\|209913624\|dbj\|BAG78698.... YGFA_ECOLI - Hypothetical protein ygfA - Escherichia coli gi\|195936529 - gi\|195936529\|ref\|ZP_03081911.1\| putative ligase [Escherichia coli O157:H7 str. EC4024] gi\|218353239, gi... - gi\|218696507\|ref\|YP_002404174.1\| putative ligase [Escherichia coli 55989], gi\|218353239\|emb\|CAU99170... gi\|75258511 - gi\|75258511\|ref\|ZP_00729933.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli E22] gi\|218555460, gi... - gi\|218555460\|ref\|YP_002388373.1\| putative ligase [Escherichia coli IAI1], gi\|218362228\|emb\|CAQ99846.... 5FCL_ECO57 - 5-formyltetrahydrofolate cyclo-ligase OS=Escherichia coli O157:H7 GN=ygfA PE=3 SV=1 EG11158 - 5-formyltetrahydrofolate cyclo-ligase family protein / 5-formyltetrahydrofolate cycloligase, folinic... gi\|238902036, gi... - gi\|238902036\|ref\|YP_002927832.1\| putative ligase [Escherichia coli BW2952], gi\|238862610\|gb\|ACR64608... gi\|254594260, gi... - gi\|254794860\|ref\|YP_003079697.1\| predicted ligase [Escherichia coli O157:H7 str. TW14359], gi\|254594... EG11158 - 5-formyltetrahydrofolate cyclo-ligase family protein / 5-formyltetrahydrofolate cycloligase, folinic... gi\|13363254, gi\|... - gi\|229544776\|ref\|NP_311809.3\| putative ligase [Escherichia coli O157:H7 str. Sakai], gi\|13363254\|dbj...	240.0	[0..67]	[248..1]
Q666Q9\|Q666Q9_YERPS - Putative Methenyl-THF synthetase-family protein - Yersinia pseudotuberculosis gi\|153950067, gi... - gi\|77630165\|ref\|ZP_00792751.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Yersinia pseudotuberc... gi\|169749643, gi... - gi\|170023109\|ref\|YP_001719614.1\| 5-formyltetrahydrofolate cyclo-ligase [Yersinia pseudotuberculosis ... gi\|51597498, gi\|... - gi\|51597498\|ref\|YP_071689.1\| putative Methenyl-THF synthetase-family protein (MTHFS). [Yersinia pseu...	240.0	[0..52]	[248..1]
gi\|229774937 - gi\|229774937\|ref\|YP_690333.2\| putative ligase [Shigella flexneri 5 str. 8401] gi\|30064222, gi\|... - gi\|30064222\|ref\|NP_838393.1\| putative ligase [Shigella flexneri 2a str. 2457T], gi\|30042479\|gb\|AAP18... gi\|56383750, gi\|... - gi\|56480199\|ref\|NP_708674.2\| putative ligase [Shigella flexneri 2a str. 301], gi\|56383750\|gb\|AAN4438...	239.0	[0..67]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRSAVGEHA RFVREALKLR RHIHLEPRVQ GLQPAAASRR FPSYLAPAMT QLPELPLTLS  60
   61 RQEIRKMIRQ RRRALTPEQQ LEMGQQAATR MMTYPPVVMA HTVAVFLSFD GELDTQPLIE 120
  121 QLWRAGKRVY LPVLHPFSAG NLLFLNYHPQ SELVMNRLKI HEPKLDVRDV LPLSRLDVLI 180
  181 TPLVAFDEYG QRLGMGGGFY DRTLQNWQHY KTQPVGYAHD CQLVEKLPVE EWDIPLPAVV 240
  241 TPSKVWEW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits