YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110805173, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110805173, gi....

Description	E-value	Query Range	Subject Range
gi\|75195330 - gi\|75195330\|ref\|ZP_00705400.1\| COG0850: Septum formation inhibitor [Escherichia coli HS] gi\|75511642 - gi\|75511642\|ref\|ZP_00734289.1\| COG0850: Septum formation inhibitor [Escherichia coli 53638] MINC_ECODH - Probable septum site-determining protein MinC OS=Escherichia coli (strain K12 / DH10B) GN=minC PE=3 ... MINC_ECOLC - Probable septum site-determining protein MinC OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Cro... gi\|73671293\|gb\|A... - MinC [Escherichia coli] EG10596 - inhibitor of FtsZ ring polymerization / Inhibitor of FtsZ ring polymerization gi\|194424066, gi... - gi\|83587321\|ref\|ZP_00925949.1\| COG0850: Septum formation inhibitor [Escherichia coli 101-1], gi\|1944... gi\|1651575, gi\|8... - gi\|89108021\|ref\|AP_001801.1\| cell division inhibitor [Escherichia coli str. K-12 substr. W3110], gi\|... MINC_ECOLI - Septum site-determining protein minC - Escherichia coli MINC_ECOBW - Probable septum site-determining protein MinC OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=... EG10596 - inhibitor of FtsZ ring polymerization / Inhibitor of FtsZ ring polymerization gi\|251784684, gi... - gi\|251784684\|ref\|YP_002998988.1\| hypothetical protein B21_01161 [Escherichia coli BL21], gi\|24237695... gi\|253773825, gi... - gi\|254288067\|ref\|YP_003053815.1\| septum formation inhibitor [Escherichia coli BL21(DE3)], gi\|2539773... gi\|254161259, gi... - gi\|254161259\|ref\|YP_003044367.1\| septum formation inhibitor [Escherichia coli B str. REL606], gi\|253... gi\|124498082, gi... - gi\|124532297\|ref\|ZP_01702191.1\| septum site-determining protein MinC [Escherichia coli B], gi\|124498...	296.0	[0..6]	[236..1]
gi\|168241406, gi... - gi\|205339378\|gb\|EDZ26142.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168259949, gi... - gi\|205351032\|gb\|EDZ37663.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168462694, gi... - gi\|195633974\|gb\|EDX52326.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168820563, gi... - gi\|205342617\|gb\|EDZ29381.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|205328658, gi... - gi\|205328658\|gb\|EDZ15422.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|168237879, gi... - gi\|197289201\|gb\|EDY28568.1\| septum site-determining protein MinC [Salmonella enterica subsp. enteric... gi\|213648381 - gi\|213648381\|ref\|ZP_03378434.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... gi\|214002611 - gi\|214002611\|ref\|ZP_03413346.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... lcl\|NC_016856.1_... - [gene=minC] [protein=septum formation inhibitor] [protein_id=YP_005237752.1] [location=1922776..1923... MINC_SALPC - Probable septum site-determining protein MinC OS=Salmonella paratyphi C (strain RKS4594) GN=minC PE=... MINC_SALTY - Septum site-determining protein MinC OS=Salmonella typhimurium GN=minC PE=1 SV=1 MINC_SALPB - Probable septum site-determining protein minC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7... gi\|200390288, gi... - gi\|200390288\|ref\|ZP_03216899.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALPA - Probable septum site-determining protein MinC OS=Salmonella paratyphi A GN=minC PE=3 SV=1 MINC_SALG2 - Probable septum site-determining protein MinC OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) ... MINC_SALCH - Probable septum site-determining protein minC OS=Salmonella choleraesuis GN=minC PE=3 SV=1 gi\|213052597 - gi\|213052597\|ref\|ZP_03345475.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALCH - Probable septum site-determining protein MinC OS=Salmonella choleraesuis (strain SC-B67) GN=minC PE=... gi\|213426612 - gi\|213426612\|ref\|ZP_03359362.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALA4 - Probable septum site-determining protein MinC OS=Salmonella agona (strain SL483) GN=minC PE=3 SV=1 gi\|197265278, gi... - gi\|197265278\|ref\|ZP_03165352.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALCH - Probable septum site-determining protein MinC OS=Salmonella choleraesuis GN=minC PE=3 SV=1 MINC_SALPK - Probable septum site-determining protein MinC OS=Salmonella paratyphi A (strain AKU_12601) GN=minC P... MINC_SALDC - Probable septum site-determining protein MinC OS=Salmonella dublin (strain CT_02021853) GN=minC PE=3... MINC_SALNS - Probable septum site-determining protein MinC OS=Salmonella newport (strain SL254) GN=minC PE=3 SV=1 MINC_SALHS - Probable septum site-determining protein MinC OS=Salmonella heidelberg (strain SL476) GN=minC PE=3 S... gi\|194468584, gi... - gi\|194468584\|ref\|ZP_03074568.1\| septum site-determining protein MinC [Salmonella enterica subsp. ent... MINC_SALSV - Probable septum site-determining protein MinC OS=Salmonella schwarzengrund (strain CVM19633) GN=minC... MINC_SALPB - Probable septum site-determining protein MinC OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7... MINC_SALTI - Septum site-determining protein minC OS=Salmonella typhi GN=minC PE=3 SV=1 MINC_SALTY - Septum site-determining protein minC OS=Salmonella typhimurium GN=minC PE=3 SV=1 gi\|16760704 - gi\|16760704\|ref\|NP_456321.1\| septum formation inhibitor [Salmonella enterica subsp. enterica serovar... gi\|238912121 - gi\|238912121\|ref\|ZP_04655958.1\| septum formation inhibitor [Salmonella enterica subsp. enterica sero... MINC_SALPA - Probable septum site-determining protein MinC OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) ... MINC_SALTY - Septum site-determining protein MinC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)... gi\|29137165, gi\|... - gi\|29141538\|ref\|NP_804880.1\| septum formation inhibitor [Salmonella enterica subsp. enterica serovar... MINC_SALTI - Septum site-determining protein MinC OS=Salmonella typhi GN=minC PE=3 SV=1	289.0	[0..6]	[236..1]
gi\|91071962, gi\|... - gi\|91210388\|ref\|YP_540374.1\| septum site-determining protein MinC [Escherichia coli UTI89], gi\|91071... gi\|187430922, gi... - gi\|187733930\|ref\|YP_001879956.1\| septum site-determining protein MinC [Shigella boydii CDC 3083-94],... gi\|237705128, gi... - gi\|237705128\|ref\|ZP_04535609.1\| septum site-determining protein MinC [Escherichia sp. 3_2_53FAA], gi...	289.0	[0..1]	[236..1]
gi\|26247488, gi\|... - gi\|26247488\|ref\|NP_753528.1\| septum formation inhibitor [Escherichia coli CFT073], gi\|26107889\|gb\|AA...	287.0	[0..1]	[236..1]
gi\|56383391, gi\|... - gi\|56479840\|ref\|NP_707072.2\| septum formation inhibitor [Shigella flexneri 2a str. 301], gi\|56383391... MINC_SHIFL - Septum site-determining protein MinC OS=Shigella flexneri GN=minC PE=3 SV=1 gi\|30062693, gi\|... - gi\|30062693\|ref\|NP_836864.1\| septum formation inhibitor [Shigella flexneri 2a str. 2457T], gi\|300409... gi\|162139348 - gi\|162139348\|ref\|YP_688693.2\| septum formation inhibitor [Shigella flexneri 5 str. 8401]	282.0	[0..6]	[236..1]
gi\|168771064, gi... - gi\|189360043\|gb\|EDU78462.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. EC44... gi\|168756537, gi... - gi\|189356338\|gb\|EDU74757.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. EC44... gi\|189372468, gi... - gi\|189372468\|gb\|EDU90884.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. EC86... gi\|188999998, gi... - gi\|188999998\|gb\|EDU68984.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. EC40... gi\|195938829 - gi\|195938829\|ref\|ZP_03084211.1\| septum formation inhibitor [Escherichia coli O157:H7 str. EC4024] MINC_ECOSM - Probable septum site-determining protein MinC OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=minC P... gi\|208738005, gi... - gi\|208822520\|ref\|ZP_03262839.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. ... gi\|208815263, gi... - gi\|208815263\|ref\|ZP_03256442.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. ... MINC_ECOK1 - Probable septum site-determining protein MinC OS=Escherichia coli O1:K1 / APEC GN=minC PE=3 SV=1 gi\|162138449 - gi\|162138449\|ref\|YP_540374.2\| septum formation inhibitor [Escherichia coli UTI89] MINC_ECO57 - Septum site-determining protein MinC OS=Escherichia coli O157:H7 GN=minC PE=3 SV=1 MINC_ECOSE - Probable septum site-determining protein MinC OS=Escherichia coli (strain SE11) GN=minC PE=3 SV=1 MINC_ECO5E - Probable septum site-determining protein MinC OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=... gi\|217328134, gi... - gi\|217328134\|ref\|ZP_03444216.1\| septum site-determining protein MinC [Escherichia coli O157:H7 str. ... MINC_ECO27 - Probable septum site-determining protein MinC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) G... MINC_ECO55 - Probable septum site-determining protein MinC OS=Escherichia coli (strain 55989 / EAEC) GN=minC PE=3... MINC_ECO8A - Probable septum site-determining protein MinC OS=Escherichia coli O8 (strain IAI1) GN=minC PE=3 SV=1 MINC_ECOLU - Probable septum site-determining protein MinC OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC... MINC_ECO7I - Probable septum site-determining protein MinC OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=mi... gi\|254592053, gi... - gi\|254792653\|ref\|YP_003077490.1\| cell division inhibitor [Escherichia coli O157:H7 str. TW14359], gi... gi\|25300116, gi\|... - gi\|85376576\|gb\|ABC70503.1\| MinC [Escherichia coli], pir\|\|G85695 septum-site determining protein MinC... MINC_SHIBS - Probable septum site-determining protein MinC OS=Shigella boydii serotype 4 (strain Sb227) GN=minC P... gi\|15830924, gi\|... - gi\|15830924\|ref\|NP_309697.1\| septum formation inhibitor [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|15801398, gi\|... - gi\|15801398\|ref\|NP_287415.1\| septum formation inhibitor [Escherichia coli O157:H7 EDL933], gi\|125148... gi\|75209226, gi\|... - gi\|75209226\|ref\|ZP_00709473.1\| COG0850: Septum formation inhibitor [Escherichia coli B171], gi\|19442... gi\|193071656, gi... - gi\|75214763\|ref\|ZP_00713258.1\| COG0850: Septum formation inhibitor [Escherichia coli E110019], gi\|19... gi\|75179229 - gi\|75179229\|ref\|ZP_00699247.1\| COG0850: Septum formation inhibitor [Shigella boydii BS512] MINC_ECO24 - Probable septum site-determining protein MinC OS=Escherichia coli O139:H28 (strain E24377A / ETEC) G... MINC_SHISS - Probable septum site-determining protein MinC OS=Shigella sonnei (strain Ss046) GN=minC PE=3 SV=1 MINC_SHIDS - Probable septum site-determining protein MinC OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=m... gi\|190900847, gi... - gi\|75227592\|ref\|ZP_00714345.1\| COG0850: Septum formation inhibitor [Escherichia coli B7A], gi\|191169... gi\|193066262, gi... - gi\|75255650\|ref\|ZP_00727422.1\| COG0850: Septum formation inhibitor [Escherichia coli E22], gi\|193066... sp\|B7UQ61\|MINC_ECO27 - Probable septum site-determining protein minC OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) G...	281.0	[0..6]	[236..1]
MINC_ECOL5 - Probable septum site-determining protein MinC OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=... gi\|190908823, gi... - gi\|75241979\|ref\|ZP_00725773.1\| COG0850: Septum formation inhibitor [Escherichia coli F11], gi\|191171... gi\|227886413, gi... - gi\|227886413\|ref\|ZP_04004218.1\| septum site-determining protein MinC [Escherichia coli 83972], gi\|22... MINC_ECOL6 - Septum site-determining protein MinC OS=Escherichia coli O6 GN=minC PE=3 SV=2 MINC_ECOL6 - Septum site-determining protein MinC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ...	280.0	[0..6]	[236..1]
MINC_YERPY - Probable septum site-determining protein MinC OS=Yersinia pseudotuberculosis serotype O:3 (strain YP... gi\|167424792, gi... - gi\|167424792\|ref\|ZP_02316545.1\| septum site-determining protein MinC [Yersinia pestis biovar Mediaev... MINC_YERPB - Probable septum site-determining protein MinC OS=Yersinia pseudotuberculosis serotype IB (strain PB1... MINC_YERPG - Probable septum site-determining protein MinC OS=Yersinia pestis bv. Antiqua (strain Angola) GN=minC... MINC_YERP3 - Probable septum site-determining protein MinC OS=Yersinia pseudotuberculosis serotype O:1b (strain I... gi\|149365993, gi... - gi\|149365993\|ref\|ZP_01888028.1\| cell division inhibitor [Yersinia pestis CA88-4125], gi\|149292406\|gb... MINC_YERPS - Probable septum site-determining protein MinC OS=Yersinia pseudotuberculosis GN=minC PE=3 SV=1 MINC_YERPP - Probable septum site-determining protein MinC OS=Yersinia pestis (strain Pestoides F) GN=minC PE=3 S... gi\|229702267, gi... - gi\|229894794\|ref\|ZP_04509974.1\| cell division inhibitor [Yersinia pestis Pestoides A], gi\|229702267\|... gi\|229897499, gi... - gi\|229897499\|ref\|ZP_04512655.1\| cell division inhibitor [Yersinia pestis biovar Orientalis str. PEXU... gi\|165919637, gi... - gi\|165928354\|ref\|ZP_02224186.1\| septum site-determining protein MinC [Yersinia pestis biovar Orienta... gi\|229898143, gi... - gi\|229898143\|ref\|ZP_04513292.1\| cell division inhibitor [Yersinia pestis biovar Orientalis str. Indi... gi\|166210547, gi... - gi\|166210547\|ref\|ZP_02236582.1\| septum site-determining protein MinC [Yersinia pestis biovar Antiqua... gi\|165991851, gi... - gi\|166009296\|ref\|ZP_02230194.1\| septum site-determining protein MinC [Yersinia pestis biovar Antiqua... gi\|167420262, gi... - gi\|167420262\|ref\|ZP_02312015.1\| septum site-determining protein MinC [Yersinia pestis biovar Orienta... gi\|167401387, gi... - gi\|167401387\|ref\|ZP_02306884.1\| septum site-determining protein MinC [Yersinia pestis biovar Antiqua... MINC_YERPE - Septum site-determining protein MinC OS=Yersinia pestis GN=minC PE=3 SV=1 gi\|45441723, gi\|... - gi\|45441723\|ref\|NP_993262.1\| septum formation inhibitor [Yersinia pestis biovar Microtus str. 91001]... gi\|21959077, gi\|... - gi\|22126118\|ref\|NP_669541.1\| septum formation inhibitor [Yersinia pestis KIM], gi\|21959077\|gb\|AAM857... gi\|218929185, gi... - gi\|218929185\|ref\|YP_002347060.1\| septum formation inhibitor [Yersinia pestis CO92], gi\|16122317\|ref\|... MINC_YERPS - Probable septum site-determining protein MinC OS=Yersinia pseudotuberculosis serotype I (strain IP32... MINC_YERPA - Probable septum site-determining protein MinC OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=min... MINC_YERPN - Probable septum site-determining protein MinC OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=mi...	279.0	[0..6]	[236..1]
gi\|238794479, gi... - gi\|77977704\|ref\|ZP_00833146.1\| COG0850: Septum formation inhibitor [Yersinia intermedia ATCC 29909],...	275.0	[0..6]	[236..1]
gi\|238723409, gi... - gi\|77973551\|ref\|ZP_00829098.1\| COG0850: Septum formation inhibitor [Yersinia frederiksenii ATCC 3364...	274.0	[0..6]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKARMSNTP IELKGSSFTL SVVHLHEAEP KVIHQALKDK IAQAPTFLKH APVVLNVSAL  60
   61 EDPVNWSAMH KAVSATGLRV IGVSGCKDAQ LKAEIEKMGL PILTEGKEKA PRPAPAPQAP 120
  121 AQNTMPVTKT RLIDTPVRSG QRIYAPQCDL IVTSHVSAGA ELIADGNIHV YGMMRGRALA 180
  181 GASGDRETQI FCTNLMAELV SIAGEYWLSD QIPAEFYGKA ARLQLVENAL TVQPLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1hf2A
Description:	Cell-division inhibitor MinC, C-terminal domain; Cell-division inhibitor MinC, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits