YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110614120, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110614120, gi....

Description	E-value	Query Range	Subject Range
gi\|1778499 - gi\|1778499\|gb\|AAB40782.1\| enterobactin synthetase component D [Escherichia coli]	279.0	[0..1]	[256..1]
gi\|26246560, gi\|... - gi\|26246560\|ref\|NP_752599.1\| phosphopantetheinyltransferase component of enterobactin synthase multi...	275.0	[0..1]	[256..1]
gi\|91071202, gi\|... - gi\|91209628\|ref\|YP_539614.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|117622805, gi... - gi\|117622805\|ref\|YP_851718.1\| phosphopantetheinyltransferase component of enterobactin synthase mult...	272.0	[0..1]	[256..1]
gi\|1279837 - gi\|1279837\|gb\|AAA97936.1\| EntD	205.0	[0..48]	[256..1]
gi\|75236565 - gi\|75236565\|ref\|ZP_00720653.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|75258680 - gi\|75258680\|ref\|ZP_00730087.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|194413995, gi... - gi\|75210787\|ref\|ZP_00710919.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|75227365, gi\|... - gi\|75227365\|ref\|ZP_00714143.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|209917839, gi... - gi\|209917839\|ref\|YP_002291923.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|218359893, gi... - gi\|218553125\|ref\|YP_002386038.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|81244439, gi\|... - gi\|82543028\|ref\|YP_406975.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|218694023, gi... - gi\|218694023\|ref\|YP_002401690.1\| phosphopantetheinyltransferase component of enterobactin synthase m...	202.0	[0..48]	[256..1]
gi\|82775860, gi\|... - gi\|82775860\|ref\|YP_402207.1\| phosphopantetheinyltransferase component of enterobactin synthase multi...	201.0	[0..48]	[256..1]
gi\|16128566, gi\|... - gi\|1786797\|gb\|AAC73684.1\| phosphopantetheinyltransferase component of enterobactin synthase multienz... ENTD_ECOLI - 4'-phosphopantetheinyl transferase entD (EC 2.7.8.-) (Enterobactin synthetase component D) (Enteroch... gi\|124530218, gi... - gi\|124530218\|ref\|ZP_01700967.1\| 4'-phosphopantetheinyl transferase [Escherichia coli B], gi\|12449938... gi\|194423552, gi... - gi\|83586982\|ref\|ZP_00925612.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|238899861, gi... - gi\|238899861\|ref\|YP_002925657.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|188487824, gi... - gi\|75514677\|ref\|ZP_00736932.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|251784085, gi... - gi\|251784085\|ref\|YP_002998389.1\| hypothetical protein B21_00538 [Escherichia coli BL21], gi\|24237635... gi\|89107449, gi\|... - gi\|89107449\|ref\|AP_001229.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|253972564, gi... - gi\|254160663\|ref\|YP_003043771.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|253976758, gi... - gi\|254287451\|ref\|YP_003053199.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|1786797\|gb\|AA... - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex [Escherichia c... gi\|170080163, gi... - gi\|170080264\|ref\|YP_001729584.1\| phosphopantetheinyltransferase component of enterobactin synthase m... gi\|169755987, gi... - gi\|170021059\|ref\|YP_001726013.1\| phosphopantetheinyltransferase component of enterobactin synthase m...	201.0	[0..48]	[256..1]
gi\|208726103, gi... - gi\|208806302\|ref\|ZP_03248639.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 st... gi\|195936130 - gi\|195936130\|ref\|ZP_03081512.1\| phosphopantetheinyltransferase component of enterobactin synthase mu... gi\|208737262, gi... - gi\|208823069\|ref\|ZP_03263387.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 st... gi\|208815366, gi... - gi\|208815366\|ref\|ZP_03256545.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 st... gi\|217326521, gi... - gi\|217326521\|ref\|ZP_03442605.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 st... gi\|209159202, gi... - gi\|209397802\|ref\|YP_002269215.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 s... gi\|168754678, gi... - gi\|189358090\|gb\|EDU76509.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|189360860, gi... - gi\|189360860\|gb\|EDU79279.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|189369104, gi... - gi\|189369104\|gb\|EDU87520.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|209777620, gi... - pir\|\|A85557 enterobactin synthetase component D [imported] - Escherichia coli (strain O157:H7, subst... gi\|56479681, gi\|... - gi\|56479681\|ref\|NP_706438.2\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|189003118, gi... - gi\|189003118\|gb\|EDU72104.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... ENTD_ECO57 - 4'-phosphopantetheinyl transferase entD OS=Escherichia coli O157:H7 GN=entD PE=3 SV=1 ENTD_SHIFL - 4'-phosphopantetheinyl transferase entD OS=Shigella flexneri GN=entD PE=3 SV=1 gi\|157065756, gi... - gi\|75194767\|ref\|ZP_00704837.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn... gi\|187769692, gi... - gi\|187769692\|gb\|EDU33536.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|15800297, gi\|... - gi\|15800297\|ref\|NP_286309.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|189379399, gi... - gi\|189379399\|gb\|EDU97815.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|30040284, gi\|... - gi\|30062040\|ref\|NP_836211.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|189373498, gi... - gi\|189373498\|gb\|EDU91914.1\| 4'-phosphopantetheinyl transferase entD [Escherichia coli O157:H7 str. E... gi\|13360080, gi\|... - gi\|15829876\|ref\|NP_308649.1\| phosphopantetheinyltransferase component of enterobactin synthase multi... gi\|254591149, gi... - gi\|254791749\|ref\|YP_003076586.1\| phosphopantetheinyltransferase component of enterobactin synthase m...	201.0	[0..48]	[256..1]
gi\|75177515, gi\|... - gi\|75177515\|ref\|ZP_00697596.1\| COG2977: Phosphopantetheinyl transferase component of siderophore syn...	201.0	[0..48]	[256..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVVHAGCGV NALSGLQRSC QFNILQDHVG LISVAHQAVL RLSSVSNMVD MKTTHTSLPF  60
   61 AG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [63-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HTLHFVEFDP ANFCEQDLLW LPHYAQLQHA GRKRKTEHLA GRIAAVYALR EYGYKCVPAI  60
   61 GELRQPVWPA EVYGSISHCG ATALAVVSRQ PIGVDIEEIF SAQTATELTD NIITPAEHER 120
  121 LADCGLAFSL ALTLAFSAKE SAFKASEIQT DAGFLDYQII SWNKQQVIIH RENEMFAVHW 180
  181 QIKEKIVITL CQHD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1qr0A
Description:	4'-Phosphopantetheinyl transferase SFP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.953339213172222	bayes_pls_golite062009
transferase activity	0.17804298348743	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0354356597199104	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: