YRC Public Data Repository - Protein Structure Prediction

Protein:	EDAD_MOUSE
Organism:	Mus musculus
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EDAD_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26334953, gi\|... - gi\|26344616\|dbj\|BAC35957.1\| unnamed protein product [Mus musculus], gi\|26334953\|dbj\|BAC31177.1\| unna...	373.0	[0..1]	[208..1]
gi\|119590458, gi... - gi\|56204335\|emb\|CAI22303.1\| EDAR-associated death domain [Homo sapiens], gi\|55662294\|emb\|CAH70609.1\|...	358.0	[0..1]	[208..1]
gi\|109506266 - gi\|109506266\|ref\|XP_001054456.1\| PREDICTED: similar to EDAR-associated death domain isoform B [Rattu...	355.0	[0..7]	[208..176]
gi\|109019924 - gi\|109019924\|ref\|XP_001099801.1\| PREDICTED: EDAR-associated death domain [Macaca mulatta]	345.0	[0..9]	[208..19]
EDAD_MACFA - Ectodysplasin-A receptor-associated adapter protein OS=Macaca fascicularis GN=EDARADD PE=2 SV=1	342.0	[0..11]	[208..12]
gi\|114573320 - gi\|114573320\|ref\|XP_514291.2\| PREDICTED: EDAR-associated death domain isoform 2 [Pan troglodytes]	334.0	[0..9]	[208..19]

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Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPDDPLRS DHMAKEPVED TDPSTLSFAM SDKYPIQDTG LPKAKECDTV NSNCPPNSDD  60
   61 QPQGEENDFP DSTKDPL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [78-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGVSRNQPCK DRKGSCSCPS CSPRAPTISD LLNDQDLLDT IRIKLDPCHP TVKNWRNFAS  60
   61 KWGMPYDELC FLEQRPQSPT LEFLFRNSQR TVGQLMELCR LYHRADVEKI LRRWVDEEWP 120
  121 HRGHSDSSMH F

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	2d96A
Description:	No description for 2d96A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits