YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF9_MOUSE
Organism:	Mus musculus
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF9_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|28175808 - gi\|28175808\|gb\|AAH43028.1\| TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor ...	400.0	[0..1]	[247..1]
TAF9_RAT - Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus GN=Taf9 PE=2 SV=1	396.0	[0..1]	[249..1]
gi\|73949703, gi\|... - gi\|73949705\|ref\|XP_861924.1\| PREDICTED: similar to Transcription initiation factor TFIID subunit 9 (...	386.0	[0..1]	[247..1]
gi\|54696168, gi\|... - gi\|61368814\|gb\|AAX43241.1\| TAF9 RNA polymerase II TATA box binding protein-associated factor [synthe...	385.0	[0..1]	[247..1]
TAF9 - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa gi\|208968253, gi... - gi\|61358704\|gb\|AAX41610.1\| TAF9 RNA polymerase II TATA box binding protein (TBP)-associated factor [...	384.0	[0..1]	[247..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGKMASPK SMPKDAQMMA QILKDMGITE YEPRVINQML EFAFRYVTTI LDDAKIYSSH  60
   61 AKKATVDADD VRLAIQCRAD QSFTSPPPRD FLLDIARQRN QTPLPLIKPY SGPRLPPDRY 120
  121 CLTAPNYRLK SLQKKAPAPA GRITVPRLSV GSVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.045757
Match:	1tafA
Description:	TAF(II)42
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [155-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRPSTPTLGT PTPQTMSVST KVGTPMSLTG QRFTVQMPAS QSPAVKASIP ATSTVQNVLI  60
   61 NPSLIGSKNI LITTNMVSQN TAESANALKR KREDDDDDDD DDDDDDYDNM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits