YRC Public Data Repository - Protein Structure Prediction

Protein:	CNEP1_RAT
Organism:	Rattus norvegicus
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNEP1_RAT.

Description	E-value	Query Range	Subject Range
gi\|114666484 - gi\|114666484\|ref\|XP_511976.2\| PREDICTED: hypothetical protein LOC455234 [Pan troglodytes]	298.0	[0..1]	[243..118]
gi\|94391670 - gi\|94391670\|ref\|XP_998418.1\| PREDICTED: similar to Dullard homolog [Mus musculus]	294.0	[0..1]	[244..61]
gi\|109113077 - gi\|109113077\|ref\|XP_001117997.1\| PREDICTED: similar to dullard homolog [Macaca mulatta]	286.0	[0..2]	[240..1]
CNEP1_XENTR - CTD nuclear envelope phosphatase 1 OS=Xenopus tropicalis GN=ctdnep1 PE=2 SV=1	284.0	[0..1]	[244..1]
DULLARD - dullard homolog (Xenopus laevis)	283.0	[0..1]	[244..1]
CNEP1_XENLA - CTD nuclear envelope phosphatase 1 OS=Xenopus laevis GN=ctdnep1 PE=1 SV=1	282.0	[0..1]	[244..1]
CNEP1_BOVIN - CTD nuclear envelope phosphatase 1 OS=Bos taurus GN=CTDNEP1 PE=2 SV=1	282.0	[0..1]	[244..1]
gi\|73955418, gi\|... - gi\|73955424\|ref\|XP_857683.1\| PREDICTED: similar to dullard homolog isoform 4 [Canis familiaris], gi\|...	281.0	[0..1]	[244..1]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRTQCLLGL RTFVAFAAKL WSFFIYLLRR QIRTVIQYQT VRYDILPLSP LSRNRLAQVK  60
   61 RKILVLDLDE TLIHSHHDGV LRPTVRPGTP PDFILKVVID KHPVRFFVHK RPHVDFFLEV 120
  121 VSQWYELVVF TASMEIYGSA VADKLDNSRS ILKRRYYRQH CTLELGSYIK DLSVVHSDLS 180
  181 SIVILDNSPG AYRSHPDNAI PIKSWFSDPS DTALLNLLPM LDALRFTADV RSVLSRNLHQ 240
  241 HRLW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	2hhlA
Description:	No description for 2hhlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits