YRC Public Data Repository - Protein Structure Prediction

Protein:	CPLX4_MOUSE
Organism:	Mus musculus
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPLX4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|109506723, gi... - gi\|109507479\|ref\|XP_001065314.1\| PREDICTED: similar to complexin 4 [Rattus norvegicus], gi\|109506723...	239.0	[0..1]	[160..111]
gi\|26336316 - gi\|26336316\|dbj\|BAC31843.1\| unnamed protein product [Mus musculus]	196.0	[0..1]	[160..1]
gi\|109122306 - gi\|109122306\|ref\|XP_001087561.1\| PREDICTED: similar to complexin 4 [Macaca mulatta]	190.0	[0..1]	[160..1]
gi\|114673349 - gi\|114673349\|ref\|XP_001142646.1\| PREDICTED: complexin 4 [Pan troglodytes] gi\|190691023, gi... - gi\|190691023\|gb\|ACE87286.1\| complexin 4 protein [synthetic construct], gi\|190689661\|gb\|ACE86605.1\| c... CPLX4 - complexin 4	189.0	[0..1]	[160..1]
gi\|73945932 - gi\|73945932\|ref\|XP_852635.1\| PREDICTED: similar to complexin 4 [Canis familiaris]	187.0	[0..1]	[160..1]
CPLX3_BOVIN - Complexin-3 OS=Bos taurus GN=CPLX3 PE=2 SV=1	167.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFVKNMIS NQVKNLGFGG GSEEKKEEGG TSDPAAAKGM TREEYEEYQK QMIEEKMERD  60
   61 AAFTQKKAER ACLRVHLRDK YRLPKSEMDE TQIQLAGDDV DLPEDLRKMV DEDQDEEEEK 120
  121 DSILGQLQNL QNMDLDTIKE KAQATFTEIK QSAEQKCSVM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits