YRC Public Data Repository - Protein Structure Prediction

Protein:	TR13C_MOUSE
Organism:	Mus musculus
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR13C_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|19070549 - gi\|19070549\|gb\|AAL83914.1\|AF350257_1 TRAF3 binding protein [Mus musculus]	288.0	[0..1]	[175..1]
gi\|109482630, gi... - gi\|109482630\|ref\|XP_001077542.1\| PREDICTED: similar to tumor necrosis factor receptor superfamily, m...	240.0	[0..20]	[175..20]
TNFRSF13C - tumor necrosis factor receptor superfamily, member 13C gi\|94963111 - gi\|94963111\|gb\|AAI11586.1\| TNFRSF13C protein [synthetic construct]	182.0	[0..9]	[175..6]
gi\|109094458 - gi\|109094458\|ref\|XP_001101623.1\| PREDICTED: similar to BAFF receptor [Macaca mulatta]	165.0	[0..9]	[175..6]
gi\|76616995 - gi\|76616995\|ref\|XP_875941.1\| PREDICTED: similar to BAFF receptor [Bos taurus]	146.0	[0..9]	[174..6]
gi\|114686776 - gi\|114686776\|ref\|XP_001154286.1\| PREDICTED: similar to BAFF receptor [Pan troglodytes]	134.0	[0..40]	[175..215]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGARRLRVRS QRSRDSSVPT QCNQTECFDP LVRNCVSCEL FHTPDTGHTS SLEPGTALQP  60
   61 QEGSALRPDV ALLVGAPALL GLILALTLVG LVSLVSWRWR QQLRTASPDT SEGVQQESLE 120
  121 NVFVPSSETP HASAPTWPPL KEDADSALPR HSVPVPATEL GSTELVTTKT AGPEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits