YRC Public Data Repository - Protein Structure Prediction

Protein:	TSR2_MOUSE
Organism:	Mus musculus
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSR2_MOUSE.

Description	E-value	Query Range	Subject Range
TSR2 - TSR2, 20S rRNA accumulation, homolog (S. cerevisiae)	222.0	[0..1]	[191..1]
gi\|19483873 - gi\|19483873\|gb\|AAH25008.1\| Tsr2 protein [Mus musculus]	221.0	[0..2]	[191..1]
gi\|109130877 - gi\|109130877\|ref\|XP_001090023.1\| PREDICTED: hypothetical protein [Macaca mulatta]	220.0	[0..1]	[191..1]
gi\|57111799 - gi\|57111799\|ref\|XP_538053.1\| PREDICTED: similar to CG14543-PA [Canis familiaris]	204.0	[0..1]	[191..1]
TSR2_BOVIN - Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1	204.0	[0..1]	[191..1]
gi\|44983704 - gi\|44983704\|gb\|AAS52803.1\| AER119Wp [Ashbya gossypii ATCC 10895] gi\|45190725, gi\|... - gi\|45190725\|ref\|NP_984979.1\| AER119Wp [Ashbya gossypii ATCC 10895], gi\|44983704\|gb\|AAS52803.1\| AER11...	184.0	[0..6]	[189..25]
gi\|37681785 - gi\|37681785\|gb\|AAQ97770.1\| hypothetical protein DT1P1A10 [Danio rerio]	179.0	[0..1]	[191..1]
orf19.10515, orf... - orf19.2998 CGDID:CAL0006160 Assembly 19, Contig19-10163 (141690, 141061) CDS, reverse complemented, ... gi\|68469419, gi\|... - gi\|68469419\|ref\|XP_721224.1\| hypothetical protein CaO19.10515 [Candida albicans SC5314], gi\|68468875...	179.0	[0..7]	[190..24]

Back

Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAAEDVRV LFGAAVRAAL EAWPALQIAV ENGFGGVHSQ EKAEWLGGAV EDYFIANADL  60
   61 ELEEIEDFLG ELMTTEFDTV VEDGSLPQVS QQLQTMFHHF QKGDGAALQE MTSQINQKKC 120
  121 KVTATPLMTA KETDVAEDDV DSVEEMEVTA TNDGATTDEV CPQPQPSDPD TQTIKEEDIV 180
  181 EDGWTIVRRK K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits