YRC Public Data Repository - Protein Structure Prediction

Protein:	UTP25_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	652 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UTP25_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|109130455 - gi\|109130455\|ref\|XP_001095294.1\| PREDICTED: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Macaca m...	358.0	[0..31]	[651..294]
gi\|109510438, gi... - gi\|109511507\|ref\|XP_001060162.1\| PREDICTED: similar to ATP-dependent RNA helicase DDX3X (DEAD box pr...	351.0	[0..31]	[651..44]
DDX3X_MOUSE - ATP-dependent RNA helicase DDX3X OS=Mus musculus GN=Ddx3x PE=1 SV=3	351.0	[0..31]	[651..44]
tr\|G3GSH5\|G3GSH5... - ATP-dependent RNA helicase DDX3X OS=Cricetulus griseus GN=I79_000589 PE=3 SV=1 gi\|20373098 - gi\|20373098\|dbj\|BAB91216.1\| RNA helicase [Mesocricetus auratus]	351.0	[0..31]	[651..44]
gi\|62087546 - gi\|62087546\|dbj\|BAD92220.1\| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 variant [Homo sapiens]	350.0	[0..31]	[651..56]
gi\|74006730, gi\|... - gi\|74006732\|ref\|XP_538003.2\| PREDICTED: similar to DEAD-box protein 3, X-chromosomal (Helicase-like ...	350.0	[0..31]	[651..44]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIESDLDGA SMDELAGKSY EALLYLMNKN KKRKPEKKDD KEKSSKKVQK KNKVIESLNE  60
   61 MEVEMEDENE NENDEQEAIQ YYINVESQDA DETLHQEAQD SSEDPFHQHF DYDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-652]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEVIKNSIAA YDEGKLCKSI EESKLGVSQS FFPDVTKRLP CSCLSEIKNI DDLGLKQRIL  60
   61 DSYKKQKPSG QLTSMQIELA KAMFNYQDVF FTNMSMKSHK LGTSLLALHA LNHVFKTRDR 120
  121 VLKNSARISQ NPELEFRDQG YTRPKVLILL PTRNSAFEFI NLLISYSGTN QVENRKRFDN 180
  181 EFSIEKEVIS EKKPEDFRYL FSGNTDDMFR LGVKFTRKTV KLFSQFYNSD IIVASPLGLR 240
  241 LAIGNKGDKK RDLDYLSSIE IAMVDQAHAL VMQNWEHIEC IFDELNGLPK EAHGCDFSRV 300
  301 RPWYLDQQAR YMRQTILFSQ YNNLDINSFF SHYMSNIAGK VKFRSLLHGV LNRLGYKVTQ 360
  361 TFVRISVDSI IKVPDARFSY FTGSILVQLK KYSQSGILVY IPSYFDFVRV RNYMDEEGIN 420
  421 YSAISEYSSV SDMTRARNLF YQGRTNIMLY TERAHHFRRF DFRGVKAVVM YGPPTNPQFY 480
  481 VELVRMPMRT ISEGNLDSDA AKCRIMYTKF DSICLEGIVG YQRVSNMCHG KHEVFEFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.522879
Match:	2db3A
Description:	No description for 2db3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits